当前解析结果
SmilChr08G004594| 统一新 Gene ID | SmilChr08G004594 |
|---|---|
| 名称 | SmilChr08G004594 |
| 描述 | probable disease resistance protein At1g58602 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 55514687 - 55515415 / + |
| NCBI Gene ID | LOC130998730 |
|---|---|
| GeneID | 130998730 |
| locus_tag | - |
| NCBI Name | LOC130998730 |
| 原始查询 | LOC130998730 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable disease resistance protein At1g58602 |
| 产物 | probable disease resistance protein At1g58602 |
| Arabidopsis | AT1G59218 (AT1G59218)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:842234] identity=34.31; qcov=0.417; evalue=1.51e-07; confidence=low |
| Rice | Os11g0654100- identity=29.53; qcov=0.682; evalue=3.64e-10; confidence=low |
| GO | GO:0006457 (protein folding); GO:0043014 (alpha-tubulin binding) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998730 |
| Rank | 定位位置 | 中文 | 五折投票比例 | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057780121.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057780121.1 |
| 3 | Cytosol | 细胞质基质 | 0.40000 | XP_057780121.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:55514801 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B104,D10 |
Chr8:55514815 |
G |
A |
EMS_canonical_SNV | stop_gained | 16 | B137,B139,B18,B51,B52,B60,B73,B75,C20,C45,C54,C6,C71,C85,D2,D3 |
Chr8:55514857 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B49,C68 |
Chr8:55514873 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A18,B22,B38 |
Chr8:55514916 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | D6 |
Chr8:55514916 |
TC |
T |
1bp_deletion | CDS_variant | 1 | D6 |
Chr8:55514926 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A18,B102,B73 |
Chr8:55514928 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B70,C83 |
Chr8:55514931 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C8,C82 |
Chr8:55514951 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B140,B73,B77,B80,C32 |
Chr8:55514962 |
GT |
G |
1bp_deletion | frameshift_variant | 15 | B115,B117,B122,B124,B133,B41,B61,B94,C22,C25,C3,C38,C5,C80,D4 |
Chr8:55514979 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B19 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。