当前解析结果
SmilChr08G004617| 统一新 Gene ID | SmilChr08G004617 |
|---|---|
| 名称 | SmilChr08G004617 |
| 描述 | putative late blight resistance protein homolog R1A-10 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 55719251 - 55721908 / + |
| NCBI Gene ID | LOC130998744 |
|---|---|
| GeneID | 130998744 |
| locus_tag | - |
| NCBI Name | LOC130998744 |
| 原始查询 | LOC130998744 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1A-10 |
| 产物 | putative late blight resistance protein homolog R1A-10 |
| Arabidopsis | AT3G46530 (RPP13)NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:823806] identity=34.3; qcov=0.576; evalue=5.53e-70; confidence=low |
| Rice | Os11g0633500- identity=33.3; qcov=0.53; evalue=2.32e-72; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998744 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057780135.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057780135.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057780135.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057780135.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057780135.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:55719314 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B101,B78,C85 |
Chr8:55719315 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C34,C5,C8 |
Chr8:55719324 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B133,B23,C57 |
Chr8:55719331 |
CG |
C |
1bp_deletion | frameshift_variant | 19 | A18,A21,B108,B115,B122,B19,B2,B23,B47,B69,B85,B91,C15,C19,C28,C38,C56,C60,C70 |
Chr8:55719351 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B18 |
Chr8:55719356 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C34,C5,C8 |
Chr8:55719364 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B115 |
Chr8:55719373 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | D6,D8 |
Chr8:55719379 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | D6,D8 |
Chr8:55719484 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B101,B17,B80,B97,D11 |
Chr8:55719491 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A7,B18,B84,C55,C79 |
Chr8:55719494 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B33,B49,B60,C32,C8 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057780135.1PF00931
NB-ARC 156-321 aa
PF23559
WHD_DRP 405-476 aa
PF23598
LRR_14 540-835 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057780135.1 |
Pfam | PF00931 |
NB-ARC | Domain | 156 | 321 | 1.2e-42 | 146.1 | NB-ARC domain |
XP_057780135.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 405 | 476 | 8.7e-21 | 74.5 | Disease resistance protein Winged helix domain |
XP_057780135.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 540 | 835 | 3.8e-14 | 52.9 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。