Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G004692`

染色体: Chr08 坐标: 56349327-56349982 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G004692`
名称	SmilChr08G004692
描述	putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	56349327 - 56349982 / `-`

ID 对照

NCBI Gene ID	`LOC130998779`
GeneID	`130998779`
locus_tag	`-`
NCBI Name	`LOC130998779`
原始查询	`LOC130998779`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial
产物	putative pentatricopeptide repeat-containing protein At1g12700%2C mitochondrial
Arabidopsis	`AT1G12620` (AT1G12620) Pentatricopeptide repeat (PPR) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837818] identity=39; qcov=0.988; evalue=7.34e-34; confidence=medium
Rice	`Os03g0165100` - identity=35.2; qcov=0.988; evalue=2.66e-30; confidence=medium
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF23276 (TPR_24)
InterPro	-
eggNOG	-
NR	GeneID:130998779

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	0.80000	`XP_057780169.1`
2	Chloroplast	叶绿体	0.20000	`XP_057780169.1`
3	Nucleus	细胞核	0.00000	`XP_057780169.1`
4	Chromosome	染色体	0.00000	`XP_057780169.1`
5	Centromere	着丝粒	0.00000	`XP_057780169.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:56349710`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B13
`Chr8:56349772`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C48

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780169.1

161 aa

161

PPR

PPR_2

PPR_3

PPR_1

PPR

PPR_2

PPR_3

PPR_1

PPR_2

PPR

TPR_24

PPR_3

PPR_1

PPR_2

PPR

PF01535 PPR 1-25 aa PF13041 PPR_2 1-42 aa PF13812 PPR_3 16-73 aa PF12854 PPR_1 25-54 aa PF01535 PPR 31-61 aa PF13041 PPR_2 35-77 aa PF13812 PPR_3 53-109 aa PF12854 PPR_1 59-90 aa PF13041 PPR_2 64-112 aa PF01535 PPR 66-96 aa PF23276 TPR_24 71-155 aa PF13812 PPR_3 87-141 aa PF12854 PPR_1 94-127 aa PF13041 PPR_2 98-145 aa PF01535 PPR 102-131 aa PF01535 PPR 136-155 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057780169.1`	Pfam	`PF01535`	PPR	Repeat	1	25	5.9e-35	117.8	PPR repeat
`XP_057780169.1`	Pfam	`PF13041`	PPR_2	Repeat	1	42	1.1e-53	179.9	PPR repeat family
`XP_057780169.1`	Pfam	`PF13812`	PPR_3	Repeat	16	73	1.6e-20	73.6	Pentatricopeptide repeat domain
`XP_057780169.1`	Pfam	`PF12854`	PPR_1	Repeat	25	54	2.8e-41	139.6	PPR repeat
`XP_057780169.1`	Pfam	`PF01535`	PPR	Repeat	31	61	5.9e-35	117.8	PPR repeat
`XP_057780169.1`	Pfam	`PF13041`	PPR_2	Repeat	35	77	1.1e-53	179.9	PPR repeat family
`XP_057780169.1`	Pfam	`PF13812`	PPR_3	Repeat	53	109	1.6e-20	73.6	Pentatricopeptide repeat domain
`XP_057780169.1`	Pfam	`PF12854`	PPR_1	Repeat	59	90	2.8e-41	139.6	PPR repeat
`XP_057780169.1`	Pfam	`PF13041`	PPR_2	Repeat	64	112	1.1e-53	179.9	PPR repeat family
`XP_057780169.1`	Pfam	`PF01535`	PPR	Repeat	66	96	5.9e-35	117.8	PPR repeat
`XP_057780169.1`	Pfam	`PF23276`	TPR_24	Repeat	71	155	4.1e-11	43.6	Pentatricopeptide repeat-containing protein
`XP_057780169.1`	Pfam	`PF13812`	PPR_3	Repeat	87	141	1.6e-20	73.6	Pentatricopeptide repeat domain
`XP_057780169.1`	Pfam	`PF12854`	PPR_1	Repeat	94	127	2.8e-41	139.6	PPR repeat
`XP_057780169.1`	Pfam	`PF13041`	PPR_2	Repeat	98	145	1.1e-53	179.9	PPR repeat family
`XP_057780169.1`	Pfam	`PF01535`	PPR	Repeat	102	131	5.9e-35	117.8	PPR repeat
`XP_057780169.1`	Pfam	`PF01535`	PPR	Repeat	136	155	5.9e-35	117.8	PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057924186.1
ATGATACATGGATTGTTTAGTGAACGTAGATTTTCCGAGGGCTGGAAACTTTTCAAGGATATGGAAGCTCGACGAGTATGTCCTGATATATATACTTATAGTACATTGTTGGATGGGCTGTGCAGGAATGGGGAGACTGATGAAGCTCTTTCTTTTCTGCATACGATTGAAGGGAAAGGAGTTGATCTCGATAGAGTTACATATGGGGCTGTCATTAATGGATTATGCAAAAATGGGAAACTTGATGTTGCCAGAGATCT...

CDS

1 records

下载 CDS FASTA

LOC130998779
ATGATACATGGATTGTTTAGTGAACGTAGATTTTCCGAGGGCTGGAAACTTTTCAAGGATATGGAAGCTCGACGAGTATGTCCTGATATATATACTTATAGTACATTGTTGGATGGGCTGTGCAGGAATGGGGAGACTGATGAAGCTCTTTCTTTTCTGCATACGATTGAAGGGAAAGGAGTTGATCTCGATAGAGTTACATATGGGGCTGTCATTAATGGATTATGCAAAAATGGGAAACTTGATGTTGCCAGAGATCT...

Protein

1 records

下载 Protein FASTA

XP_057780169.1
MIHGLFSERRFSEGWKLFKDMEARRVCPDIYTYSTLLDGLCRNGETDEALSFLHTIEGKGVDLDRVTYGAVINGLCKNGKLDVARDLFNQLPSRGVLPNARMYTMIIDALCHEGSTEEAQCLLTEMQSHGCAPTSVTYNIMTRSFLKKKELSKAIPYLEIF

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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