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TF 结合位点 TF 靶基因 EMS 突变
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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G004703

染色体: Chr08 坐标: 56485562-56493057 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G004703
名称SmilChr08G004703
描述uncharacterized SmilChr08G004703
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向56485562 - 56493057 / -

ID 对照

NCBI Gene IDLOC130998782
GeneID130998782
locus_tag-
NCBI NameLOC130998782
原始查询LOC130998782

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:842594]; symbol=RPF3; hit=AT1G62930; species=arabidopsis; confidence=low
产物Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:842594]; symbol=RPF3; hit=AT1G62930; species=arabidopsis; confidence=low
ArabidopsisAT1G62930 (RPF3)
Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:842594]
identity=36.2; qcov=0.301; evalue=3.47e-119; confidence=low
RiceOs10g0495200 (Rf4)
-
identity=31.9; qcov=0.306; evalue=2.09e-107; confidence=low
GOGO:0005515 (protein binding); GO:0043531 (ADP binding)
KEGG-
PfamPF00931 (NB-ARC); PF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:130998782

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Chloroplast 叶绿体 0.60000 XP_057780171.1
2 Mitochondrion 线粒体 0.40000 XP_057780171.1
3 Nucleus 细胞核 0.00000 XP_057780171.1
4 Chromosome 染色体 0.00000 XP_057780171.1
5 Centromere 着丝粒 0.00000 XP_057780171.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:56485794 TC T 1bp_deletion frameshift_variant 24 A13,A14,A21,A6,A7,B109,B110,B130,B27,B49,B56,B57,B59,B67,B69,B87,B98,C13,C42,C53,C58,C60,C80,D6
Chr8:56485861 C T EMS_canonical_SNV CDS_variant 2 B103,C47
Chr8:56485902 G A EMS_canonical_SNV CDS_variant 3 B122,B132,B82
Chr8:56485918 G A EMS_canonical_SNV CDS_variant 1 C44
Chr8:56485977 C T EMS_canonical_SNV CDS_variant 3 A3,C36,C79
Chr8:56486021 C T EMS_canonical_SNV CDS_variant 1 D10
Chr8:56486065 AG A 1bp_deletion frameshift_variant 18 A16,B126,B128,B20,B27,B29,B30,B44,B59,B64,B78,B8,C27,C29,C51,C70,C75,C78
Chr8:56486083 C T EMS_canonical_SNV CDS_variant 3 A14,B122,C85
Chr8:56486127 G A EMS_canonical_SNV CDS_variant 2 B110,B92
Chr8:56486128 TG T 1bp_deletion frameshift_variant 3 A3,B43,B74
Chr8:56486128 TG T 1bp_deletion CDS_variant 3 A3,B43,B74
Chr8:56486130 G GAA 2bp_insertion frameshift_variant 15 B122,B133,B2,B22,B23,B38,B39,B47,B79,C15,C55,C56,C70,C76,D8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780171.1
2076 aa
N
1
1038
2076
PPR_2
PPR_1
PPR
PPR_1
PPR_3
PPR_2
TPR_24
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR
PPR_1
PPR_3
PPR_2
PPR
PPR_long
PPR_1
PPR_2
PPR
TPR_24
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_3
TPR_24
PPR_1
PPR
PPR_2
PPR_1
PPR_2
PPR
NB-ARC
PPR_1
PPR_2
PPR
PPR_1
PPR_3
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR
PPR_3
PPR_2
PPR
PPR_1
PPR_2
PPR
TPR_24
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_2
PPR
C
PF13041 PPR_2 146-196 aa PF12854 PPR_1 180-207 aa PF01535 PPR 185-211 aa PF12854 PPR_1 217-245 aa PF13812 PPR_3 217-264 aa PF13041 PPR_2 219-268 aa PF23276 TPR_24 222-310 aa PF01535 PPR 223-252 aa PF12854 PPR_1 250-282 aa PF13041 PPR_2 254-300 aa PF01535 PPR 257-283 aa PF13812 PPR_3 279-336 aa PF12854 PPR_1 288-318 aa PF13041 PPR_2 289-337 aa PF01535 PPR 292-321 aa PF13812 PPR_3 317-371 aa PF12854 PPR_1 322-349 aa PF13041 PPR_2 324-373 aa PF01535 PPR 327-350 aa PF12854 PPR_1 357-379 aa PF01535 PPR 362-384 aa PF12854 PPR_1 391-423 aa PF13812 PPR_3 392-439 aa PF13041 PPR_2 394-442 aa PF01535 PPR 397-424 aa PF17177 PPR_long 412-517 aa PF12854 PPR_1 427-458 aa PF13041 PPR_2 429-478 aa PF01535 PPR 433-462 aa PF23276 TPR_24 434-525 aa PF13812 PPR_3 452-511 aa PF12854 PPR_1 460-491 aa PF13041 PPR_2 464-513 aa PF01535 PPR 467-497 aa PF12854 PPR_1 495-526 aa PF13041 PPR_2 499-548 aa PF01535 PPR 503-531 aa PF13812 PPR_3 523-581 aa PF12854 PPR_1 530-561 aa PF13041 PPR_2 534-582 aa PF01535 PPR 537-567 aa PF12854 PPR_1 565-596 aa PF13041 PPR_2 569-617 aa PF01535 PPR 572-602 aa PF13812 PPR_3 593-647 aa PF23276 TPR_24 596-689 aa PF12854 PPR_1 600-633 aa PF01535 PPR 607-637 aa PF13041 PPR_2 609-653 aa PF12854 PPR_1 635-667 aa PF13041 PPR_2 639-683 aa PF01535 PPR 642-672 aa PF00931 NB-ARC 1031-1114 aa PF12854 PPR_1 1616-1643 aa PF13041 PPR_2 1618-1669 aa PF01535 PPR 1621-1647 aa PF12854 PPR_1 1653-1680 aa PF13812 PPR_3 1654-1700 aa PF13041 PPR_2 1655-1704 aa PF01535 PPR 1659-1688 aa PF12854 PPR_1 1686-1718 aa PF13041 PPR_2 1690-1739 aa PF01535 PPR 1693-1719 aa PF13812 PPR_3 1714-1772 aa PF12854 PPR_1 1723-1754 aa PF13041 PPR_2 1725-1773 aa PF01535 PPR 1728-1756 aa PF13812 PPR_3 1757-1809 aa PF12854 PPR_1 1758-1785 aa PF13041 PPR_2 1760-1809 aa PF01535 PPR 1763-1792 aa PF12854 PPR_1 1792-1820 aa PF01535 PPR 1798-1820 aa PF13812 PPR_3 1828-1875 aa PF13041 PPR_2 1831-1878 aa PF01535 PPR 1833-1860 aa PF12854 PPR_1 1863-1894 aa PF13041 PPR_2 1865-1914 aa PF01535 PPR 1869-1898 aa PF23276 TPR_24 1870-1959 aa PF13812 PPR_3 1889-1947 aa PF12854 PPR_1 1896-1926 aa PF13041 PPR_2 1900-1949 aa PF01535 PPR 1903-1933 aa PF12854 PPR_1 1931-1961 aa PF13041 PPR_2 1935-1983 aa PF01535 PPR 1938-1968 aa PF13812 PPR_3 1963-2013 aa PF12854 PPR_1 1966-1999 aa PF13041 PPR_2 1970-2019 aa PF01535 PPR 1973-2003 aa PF13041 PPR_2 2005-2049 aa PF01535 PPR 2008-2038 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057780171.1 Pfam PF13041 PPR_2 Repeat 146 196 0 1115.2 PPR repeat family
XP_057780171.1 Pfam PF12854 PPR_1 Repeat 180 207 1.2e-287 927.8 PPR repeat
XP_057780171.1 Pfam PF01535 PPR Repeat 185 211 5.3e-194 616.3 PPR repeat
XP_057780171.1 Pfam PF12854 PPR_1 Repeat 217 245 1.2e-287 927.8 PPR repeat
XP_057780171.1 Pfam PF13812 PPR_3 Repeat 217 264 2.1e-135 441.6 Pentatricopeptide repeat domain
XP_057780171.1 Pfam PF13041 PPR_2 Repeat 219 268 0 1115.2 PPR repeat family
XP_057780171.1 Pfam PF23276 TPR_24 Repeat 222 310 2.3e-67 225.7 Pentatricopeptide repeat-containing protein
XP_057780171.1 Pfam PF01535 PPR Repeat 223 252 5.3e-194 616.3 PPR repeat
XP_057780171.1 Pfam PF12854 PPR_1 Repeat 250 282 1.2e-287 927.8 PPR repeat
XP_057780171.1 Pfam PF13041 PPR_2 Repeat 254 300 0 1115.2 PPR repeat family
XP_057780171.1 Pfam PF01535 PPR Repeat 257 283 5.3e-194 616.3 PPR repeat
XP_057780171.1 Pfam PF13812 PPR_3 Repeat 279 336 2.1e-135 441.6 Pentatricopeptide repeat domain
XP_057780171.1 Pfam PF12854 PPR_1 Repeat 288 318 1.2e-287 927.8 PPR repeat
XP_057780171.1 Pfam PF13041 PPR_2 Repeat 289 337 0 1115.2 PPR repeat family
XP_057780171.1 Pfam PF01535 PPR Repeat 292 321 5.3e-194 616.3 PPR repeat
XP_057780171.1 Pfam PF13812 PPR_3 Repeat 317 371 2.1e-135 441.6 Pentatricopeptide repeat domain
XP_057780171.1 Pfam PF12854 PPR_1 Repeat 322 349 1.2e-287 927.8 PPR repeat
XP_057780171.1 Pfam PF13041 PPR_2 Repeat 324 373 0 1115.2 PPR repeat family
XP_057780171.1 Pfam PF01535 PPR Repeat 327 350 5.3e-194 616.3 PPR repeat
XP_057780171.1 Pfam PF12854 PPR_1 Repeat 357 379 1.2e-287 927.8 PPR repeat
XP_057780171.1 Pfam PF01535 PPR Repeat 362 384 5.3e-194 616.3 PPR repeat
XP_057780171.1 Pfam PF12854 PPR_1 Repeat 391 423 1.2e-287 927.8 PPR repeat
XP_057780171.1 Pfam PF13812 PPR_3 Repeat 392 439 2.1e-135 441.6 Pentatricopeptide repeat domain
XP_057780171.1 Pfam PF13041 PPR_2 Repeat 394 442 0 1115.2 PPR repeat family
XP_057780171.1 Pfam PF01535 PPR Repeat 397 424 5.3e-194 616.3 PPR repeat
XP_057780171.1 Pfam PF17177 PPR_long Repeat 412 517 5.3e-53 180.2 Pentacotripeptide-repeat region of PRORP
XP_057780171.1 Pfam PF12854 PPR_1 Repeat 427 458 1.2e-287 927.8 PPR repeat
XP_057780171.1 Pfam PF13041 PPR_2 Repeat 429 478 0 1115.2 PPR repeat family
XP_057780171.1 Pfam PF01535 PPR Repeat 433 462 5.3e-194 616.3 PPR repeat
XP_057780171.1 Pfam PF23276 TPR_24 Repeat 434 525 2.3e-67 225.7 Pentatricopeptide repeat-containing protein
XP_057780171.1 Pfam PF13812 PPR_3 Repeat 452 511 2.1e-135 441.6 Pentatricopeptide repeat domain
XP_057780171.1 Pfam PF12854 PPR_1 Repeat 460 491 1.2e-287 927.8 PPR repeat
XP_057780171.1 Pfam PF13041 PPR_2 Repeat 464 513 0 1115.2 PPR repeat family
XP_057780171.1 Pfam PF01535 PPR Repeat 467 497 5.3e-194 616.3 PPR repeat
XP_057780171.1 Pfam PF12854 PPR_1 Repeat 495 526 1.2e-287 927.8 PPR repeat
XP_057780171.1 Pfam PF13041 PPR_2 Repeat 499 548 0 1115.2 PPR repeat family
XP_057780171.1 Pfam PF01535 PPR Repeat 503 531 5.3e-194 616.3 PPR repeat
XP_057780171.1 Pfam PF13812 PPR_3 Repeat 523 581 2.1e-135 441.6 Pentatricopeptide repeat domain
XP_057780171.1 Pfam PF12854 PPR_1 Repeat 530 561 1.2e-287 927.8 PPR repeat
XP_057780171.1 Pfam PF13041 PPR_2 Repeat 534 582 0 1115.2 PPR repeat family
XP_057780171.1 Pfam PF01535 PPR Repeat 537 567 5.3e-194 616.3 PPR repeat
XP_057780171.1 Pfam PF12854 PPR_1 Repeat 565 596 1.2e-287 927.8 PPR repeat
XP_057780171.1 Pfam PF13041 PPR_2 Repeat 569 617 0 1115.2 PPR repeat family
XP_057780171.1 Pfam PF01535 PPR Repeat 572 602 5.3e-194 616.3 PPR repeat
XP_057780171.1 Pfam PF13812 PPR_3 Repeat 593 647 2.1e-135 441.6 Pentatricopeptide repeat domain
XP_057780171.1 Pfam PF23276 TPR_24 Repeat 596 689 2.3e-67 225.7 Pentatricopeptide repeat-containing protein
XP_057780171.1 Pfam PF12854 PPR_1 Repeat 600 633 1.2e-287 927.8 PPR repeat
XP_057780171.1 Pfam PF01535 PPR Repeat 607 637 5.3e-194 616.3 PPR repeat
XP_057780171.1 Pfam PF13041 PPR_2 Repeat 609 653 0 1115.2 PPR repeat family
XP_057780171.1 Pfam PF12854 PPR_1 Repeat 635 667 1.2e-287 927.8 PPR repeat
XP_057780171.1 Pfam PF13041 PPR_2 Repeat 639 683 0 1115.2 PPR repeat family
XP_057780171.1 Pfam PF01535 PPR Repeat 642 672 5.3e-194 616.3 PPR repeat
XP_057780171.1 Pfam PF00931 NB-ARC Domain 1031 1114 2.2e-17 63.9 NB-ARC domain
XP_057780171.1 Pfam PF12854 PPR_1 Repeat 1616 1643 1.2e-287 927.8 PPR repeat
XP_057780171.1 Pfam PF13041 PPR_2 Repeat 1618 1669 0 1115.2 PPR repeat family
XP_057780171.1 Pfam PF01535 PPR Repeat 1621 1647 5.3e-194 616.3 PPR repeat
XP_057780171.1 Pfam PF12854 PPR_1 Repeat 1653 1680 1.2e-287 927.8 PPR repeat
XP_057780171.1 Pfam PF13812 PPR_3 Repeat 1654 1700 2.1e-135 441.6 Pentatricopeptide repeat domain
XP_057780171.1 Pfam PF13041 PPR_2 Repeat 1655 1704 0 1115.2 PPR repeat family
XP_057780171.1 Pfam PF01535 PPR Repeat 1659 1688 5.3e-194 616.3 PPR repeat
XP_057780171.1 Pfam PF12854 PPR_1 Repeat 1686 1718 1.2e-287 927.8 PPR repeat
XP_057780171.1 Pfam PF13041 PPR_2 Repeat 1690 1739 0 1115.2 PPR repeat family
XP_057780171.1 Pfam PF01535 PPR Repeat 1693 1719 5.3e-194 616.3 PPR repeat
XP_057780171.1 Pfam PF13812 PPR_3 Repeat 1714 1772 2.1e-135 441.6 Pentatricopeptide repeat domain
XP_057780171.1 Pfam PF12854 PPR_1 Repeat 1723 1754 1.2e-287 927.8 PPR repeat
XP_057780171.1 Pfam PF13041 PPR_2 Repeat 1725 1773 0 1115.2 PPR repeat family
XP_057780171.1 Pfam PF01535 PPR Repeat 1728 1756 5.3e-194 616.3 PPR repeat
XP_057780171.1 Pfam PF13812 PPR_3 Repeat 1757 1809 2.1e-135 441.6 Pentatricopeptide repeat domain
XP_057780171.1 Pfam PF12854 PPR_1 Repeat 1758 1785 1.2e-287 927.8 PPR repeat
XP_057780171.1 Pfam PF13041 PPR_2 Repeat 1760 1809 0 1115.2 PPR repeat family
XP_057780171.1 Pfam PF01535 PPR Repeat 1763 1792 5.3e-194 616.3 PPR repeat
XP_057780171.1 Pfam PF12854 PPR_1 Repeat 1792 1820 1.2e-287 927.8 PPR repeat
XP_057780171.1 Pfam PF01535 PPR Repeat 1798 1820 5.3e-194 616.3 PPR repeat
XP_057780171.1 Pfam PF13812 PPR_3 Repeat 1828 1875 2.1e-135 441.6 Pentatricopeptide repeat domain
XP_057780171.1 Pfam PF13041 PPR_2 Repeat 1831 1878 0 1115.2 PPR repeat family
XP_057780171.1 Pfam PF01535 PPR Repeat 1833 1860 5.3e-194 616.3 PPR repeat
XP_057780171.1 Pfam PF12854 PPR_1 Repeat 1863 1894 1.2e-287 927.8 PPR repeat
XP_057780171.1 Pfam PF13041 PPR_2 Repeat 1865 1914 0 1115.2 PPR repeat family
XP_057780171.1 Pfam PF01535 PPR Repeat 1869 1898 5.3e-194 616.3 PPR repeat
XP_057780171.1 Pfam PF23276 TPR_24 Repeat 1870 1959 2.3e-67 225.7 Pentatricopeptide repeat-containing protein
XP_057780171.1 Pfam PF13812 PPR_3 Repeat 1889 1947 2.1e-135 441.6 Pentatricopeptide repeat domain
XP_057780171.1 Pfam PF12854 PPR_1 Repeat 1896 1926 1.2e-287 927.8 PPR repeat
XP_057780171.1 Pfam PF13041 PPR_2 Repeat 1900 1949 0 1115.2 PPR repeat family
XP_057780171.1 Pfam PF01535 PPR Repeat 1903 1933 5.3e-194 616.3 PPR repeat
XP_057780171.1 Pfam PF12854 PPR_1 Repeat 1931 1961 1.2e-287 927.8 PPR repeat
XP_057780171.1 Pfam PF13041 PPR_2 Repeat 1935 1983 0 1115.2 PPR repeat family
XP_057780171.1 Pfam PF01535 PPR Repeat 1938 1968 5.3e-194 616.3 PPR repeat
XP_057780171.1 Pfam PF13812 PPR_3 Repeat 1963 2013 2.1e-135 441.6 Pentatricopeptide repeat domain
XP_057780171.1 Pfam PF12854 PPR_1 Repeat 1966 1999 1.2e-287 927.8 PPR repeat
XP_057780171.1 Pfam PF13041 PPR_2 Repeat 1970 2019 0 1115.2 PPR repeat family
XP_057780171.1 Pfam PF01535 PPR Repeat 1973 2003 5.3e-194 616.3 PPR repeat
XP_057780171.1 Pfam PF13041 PPR_2 Repeat 2005 2049 0 1115.2 PPR repeat family
XP_057780171.1 Pfam PF01535 PPR Repeat 2008 2038 5.3e-194 616.3 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057924188.1
CCTTTATTCTCACAAAATCCTAACTCTCCTTCTTCCCCAATTCTTCAGCTTCGAACTTCAGCGCACACAACCACGCCGCCATGTTTCTGCCTAGAATTTGTTCGAATTCTTCATCTAAATTCTCCACTTTTTCCATCGCCTCTCCACATTATCAATCATTTCTTCTACCCATTTTTCATTTTGATAATGCCAGCTGCCAAATGAGGAGACACTTCTCCGCCTATCATAGATTCGATTTTGAATCTATACGTGAGCCCAAT...

CDS

1 records

下载 CDS FASTA
LOC130998782
ATGTTTCTGCCTAGAATTTGTTCGAATTCTTCATCTAAATTCTCCACTTTTTCCATCGCCTCTCCACATTATCAATCATTTCTTCTACCCATTTTTCATTTTGATAATGCCAGCTGCCAAATGAGGAGACACTTCTCCGCCTATCATAGATTCGATTTTGAATCTATACGTGAGCCCAATGATGCCGTCGCTCTATTTCGGGATATGATGAGAACGGAGCCGCTTCCTTCTATTACTGTTTTCACGAAATTGCTGAGTAC...

Protein

1 records

下载 Protein FASTA
XP_057780171.1
MFLPRICSNSSSKFSTFSIASPHYQSFLLPIFHFDNASCQMRRHFSAYHRFDFESIREPNDAVALFRDMMRTEPLPSITVFTKLLSTVVKLKQYSAALHLYEKMLQRDAPVNHYTLSIAIDCYYRLKRPDFGFAILGSFFKRGFEPTVVTLNTLVKGLLFVERIPEAAKLLGKLSAYQLCEPDEYTYSTIINGLCKAGDILQAIDLLCSLEKGRGSCKPDVYAYTTVIDSLCKDGKMEEALQLFSTLGDKGISPNVVTYN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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