当前解析结果
SmilChr08G004777| 统一新 Gene ID | SmilChr08G004777 |
|---|---|
| 名称 | SmilChr08G004777 |
| 描述 | serine carboxypeptidase 1-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 57106548 - 57108056 / - |
| NCBI Gene ID | LOC130998804 |
|---|---|
| GeneID | 130998804 |
| locus_tag | - |
| NCBI Name | LOC130998804 |
| 原始查询 | LOC130998804 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | serine carboxypeptidase 1-like |
| 产物 | serine carboxypeptidase 1-like |
| Arabidopsis | AT4G12910 (scpl20)serine carboxypeptidase-like 20 [Source:NCBI gene (formerly Entrezgene);Acc:826903] identity=69.2; qcov=0.633; evalue=5.44e-64; confidence=high |
| Rice | Os12g0257000 (CBP1)- identity=69.2; qcov=0.619; evalue=4.26e-63; confidence=high |
| GO | GO:0004185 (serine-type carboxypeptidase activity); GO:0006508 (proteolysis); GO:0016747 (acyltransferase activity, transferring groups other than amino-acyl groups); GO:0019748 (secondary metabolic process) |
| KEGG | - |
| Pfam | PF00450 (Peptidase_S10) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998804 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Vacuole | 液泡 | 0.80000 | XP_057780194.1 |
| 2 | Secreted | 分泌到胞外 | 0.20000 | XP_057780194.1 |
| 3 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057780194.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057780194.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057780194.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:57106827 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A3,A5,B28,B55 |
Chr8:57106876 |
GC |
G |
1bp_deletion | frameshift_variant | 44 | A22,B105,B11,B118,B119,B12,B126,B128,B130,B136,B2,B23,B25,B31,B44,B49,B58,B59,B6,B66,B67,B7,B71,B80,B82,B85,B86,B90,B97,C21,C33,C41,C43,C44,C45,C46,C50,C52,C53,C55,C64,C67,C83,D9 |
Chr8:57106881 |
GCC |
G |
2bp_deletion | frameshift_variant | 33 | A10,A14,A3,A5,B10,B104,B112,B113,B13,B131,B134,B135,B21,B25,B26,B50,B65,B75,B76,B8,B82,B99,C15,C16,C19,C24,C25,C29,C57,C83,C87,D11,D6 |
Chr8:57107326 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
Chr8:57107360 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
Chr8:57107366 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B32 |
Chr8:57107367 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
Chr8:57107432 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C77 |
Chr8:57107840 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C63 |
Chr8:57107849 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B134,B96,C45 |
Chr8:57107898 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | D10,D11 |
Chr8:57107966 |
TGA |
T |
2bp_deletion | frameshift_variant | 2 | D10,D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057780194.1PF00450
Peptidase_S10 32-206 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057780194.1 |
Pfam | PF00450 |
Peptidase_S10 | Domain | 32 | 206 | 2.4e-35 | 123.4 | Serine carboxypeptidase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。