Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G004789`

染色体: Chr08 坐标: 57198163-57199713 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G004789`
名称	SmilChr08G004789
描述	putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	57198163 - 57199713 / `+`

ID 对照

NCBI Gene ID	`LOC130998805`
GeneID	`130998805`
locus_tag	`-`
NCBI Name	`LOC130998805`
原始查询	`LOC130998805`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial
产物	putative pentatricopeptide repeat-containing protein At1g12700%2C mitochondrial
Arabidopsis	`AT1G12700` (RPF1) RNA processing FACTOR [Source:NCBI gene (formerly Entrezgene);Acc:837825] identity=37.9; qcov=0.952; evalue=3.33e-125; confidence=medium
Rice	`Os08g0110200` (Rf6) - identity=34.1; qcov=0.953; evalue=7.78e-92; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro	-
eggNOG	-
NR	GeneID:130998805

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	0.80000	`XP_057780195.1`
2	Chloroplast	叶绿体	0.20000	`XP_057780195.1`
3	Nucleus	细胞核	0.00000	`XP_057780195.1`
4	Chromosome	染色体	0.00000	`XP_057780195.1`
5	Centromere	着丝粒	0.00000	`XP_057780195.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:57198169`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B101,B137
`Chr8:57198249`	`GA`	`G`	1bp_deletion	frameshift_variant	1	B31
`Chr8:57198249`	`GA`	`G`	1bp_deletion	CDS_variant	1	B31
`Chr8:57198266`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B35
`Chr8:57198383`	`C`	`CG`	1bp_insertion	frameshift_variant	1	C52
`Chr8:57198383`	`C`	`CG`	1bp_insertion	CDS_variant	1	C52
`Chr8:57198493`	`ACC`	`A`	2bp_deletion	frameshift_variant	4	B120,C11,C18,C69
`Chr8:57198493`	`ACC`	`A`	2bp_deletion	CDS_variant	4	B120,C11,C18,C69
`Chr8:57198497`	`T`	`TAC`	2bp_insertion	frameshift_variant	5	B120,B90,C11,C18,C69
`Chr8:57198497`	`T`	`TAC`	2bp_insertion	CDS_variant	5	B120,B90,C11,C18,C69
`Chr8:57198554`	`G`	`A`	EMS_canonical_SNV	stop_gained	37	A16,A2,A8,A9,B1,B102,B104,B112,B118,B122,B129,B131,B15,B16,B18,B20,B23,B26,B27,B41,B42,B43,B53,B76,B82,B83,B94,C18,C3,C32,C40,C41,C63,C64,C68,C70,D8
`Chr8:57198629`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B10,B31,D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780195.1

516 aa

258

516

PPR_2

PPR

PPR_2

PPR

PPR_3

PPR_1

PPR_2

TPR_24

PPR

PPR_1

PPR_2

PPR

PPR_3

PPR_1

PPR_2

PPR

PPR_3

PPR_1

PPR_2

PPR

PPR_1

PPR_2

PPR

PPR_3

PPR_2

PPR

TPR_24

PPR_long

PPR_1

PPR

PPR_2

PPR_3

PPR_1

PPR

PPR_2

PPR_3

PPR_1

PPR_2

PPR

PF13041 PPR_2 35-84 aa PF01535 PPR 41-66 aa PF01535 PPR 74-102 aa PF13041 PPR_2 105-155 aa PF01535 PPR 108-131 aa PF01535 PPR 145-170 aa PF13812 PPR_3 173-228 aa PF12854 PPR_1 176-204 aa PF13041 PPR_2 178-226 aa PF23276 TPR_24 179-271 aa PF01535 PPR 181-211 aa PF12854 PPR_1 209-241 aa PF13041 PPR_2 215-257 aa PF01535 PPR 216-244 aa PF13812 PPR_3 237-288 aa PF12854 PPR_1 246-277 aa PF13041 PPR_2 248-286 aa PF01535 PPR 251-279 aa PF13812 PPR_3 275-331 aa PF12854 PPR_1 281-309 aa PF13041 PPR_2 283-326 aa PF01535 PPR 287-316 aa PF12854 PPR_1 315-343 aa PF13041 PPR_2 318-366 aa PF01535 PPR 322-343 aa PF13812 PPR_3 351-398 aa PF13041 PPR_2 353-401 aa PF01535 PPR 356-383 aa PF23276 TPR_24 356-449 aa PF17177 PPR_long 358-502 aa PF12854 PPR_1 386-415 aa PF01535 PPR 392-420 aa PF13041 PPR_2 392-437 aa PF13812 PPR_3 412-470 aa PF12854 PPR_1 419-450 aa PF01535 PPR 426-455 aa PF13041 PPR_2 430-471 aa PF13812 PPR_3 447-501 aa PF12854 PPR_1 454-485 aa PF13041 PPR_2 459-507 aa PF01535 PPR 461-491 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057780195.1`	Pfam	`PF13041`	PPR_2	Repeat	35	84	9.6e-134	436.2	PPR repeat family
`XP_057780195.1`	Pfam	`PF01535`	PPR	Repeat	41	66	4.4e-88	284.3	PPR repeat
`XP_057780195.1`	Pfam	`PF01535`	PPR	Repeat	74	102	4.4e-88	284.3	PPR repeat
`XP_057780195.1`	Pfam	`PF13041`	PPR_2	Repeat	105	155	9.6e-134	436.2	PPR repeat family
`XP_057780195.1`	Pfam	`PF01535`	PPR	Repeat	108	131	4.4e-88	284.3	PPR repeat
`XP_057780195.1`	Pfam	`PF01535`	PPR	Repeat	145	170	4.4e-88	284.3	PPR repeat
`XP_057780195.1`	Pfam	`PF13812`	PPR_3	Repeat	173	228	8e-60	199.5	Pentatricopeptide repeat domain
`XP_057780195.1`	Pfam	`PF12854`	PPR_1	Repeat	176	204	1.4e-121	396.5	PPR repeat
`XP_057780195.1`	Pfam	`PF13041`	PPR_2	Repeat	178	226	9.6e-134	436.2	PPR repeat family
`XP_057780195.1`	Pfam	`PF23276`	TPR_24	Repeat	179	271	3.3e-31	108.7	Pentatricopeptide repeat-containing protein
`XP_057780195.1`	Pfam	`PF01535`	PPR	Repeat	181	211	4.4e-88	284.3	PPR repeat
`XP_057780195.1`	Pfam	`PF12854`	PPR_1	Repeat	209	241	1.4e-121	396.5	PPR repeat
`XP_057780195.1`	Pfam	`PF13041`	PPR_2	Repeat	215	257	9.6e-134	436.2	PPR repeat family
`XP_057780195.1`	Pfam	`PF01535`	PPR	Repeat	216	244	4.4e-88	284.3	PPR repeat
`XP_057780195.1`	Pfam	`PF13812`	PPR_3	Repeat	237	288	8e-60	199.5	Pentatricopeptide repeat domain
`XP_057780195.1`	Pfam	`PF12854`	PPR_1	Repeat	246	277	1.4e-121	396.5	PPR repeat
`XP_057780195.1`	Pfam	`PF13041`	PPR_2	Repeat	248	286	9.6e-134	436.2	PPR repeat family
`XP_057780195.1`	Pfam	`PF01535`	PPR	Repeat	251	279	4.4e-88	284.3	PPR repeat
`XP_057780195.1`	Pfam	`PF13812`	PPR_3	Repeat	275	331	8e-60	199.5	Pentatricopeptide repeat domain
`XP_057780195.1`	Pfam	`PF12854`	PPR_1	Repeat	281	309	1.4e-121	396.5	PPR repeat
`XP_057780195.1`	Pfam	`PF13041`	PPR_2	Repeat	283	326	9.6e-134	436.2	PPR repeat family
`XP_057780195.1`	Pfam	`PF01535`	PPR	Repeat	287	316	4.4e-88	284.3	PPR repeat
`XP_057780195.1`	Pfam	`PF12854`	PPR_1	Repeat	315	343	1.4e-121	396.5	PPR repeat
`XP_057780195.1`	Pfam	`PF13041`	PPR_2	Repeat	318	366	9.6e-134	436.2	PPR repeat family
`XP_057780195.1`	Pfam	`PF01535`	PPR	Repeat	322	343	4.4e-88	284.3	PPR repeat
`XP_057780195.1`	Pfam	`PF13812`	PPR_3	Repeat	351	398	8e-60	199.5	Pentatricopeptide repeat domain
`XP_057780195.1`	Pfam	`PF13041`	PPR_2	Repeat	353	401	9.6e-134	436.2	PPR repeat family
`XP_057780195.1`	Pfam	`PF01535`	PPR	Repeat	356	383	4.4e-88	284.3	PPR repeat
`XP_057780195.1`	Pfam	`PF23276`	TPR_24	Repeat	356	449	3.3e-31	108.7	Pentatricopeptide repeat-containing protein
`XP_057780195.1`	Pfam	`PF17177`	PPR_long	Repeat	358	502	3.1e-23	83.0	Pentacotripeptide-repeat region of PRORP
`XP_057780195.1`	Pfam	`PF12854`	PPR_1	Repeat	386	415	1.4e-121	396.5	PPR repeat
`XP_057780195.1`	Pfam	`PF01535`	PPR	Repeat	392	420	4.4e-88	284.3	PPR repeat
`XP_057780195.1`	Pfam	`PF13041`	PPR_2	Repeat	392	437	9.6e-134	436.2	PPR repeat family
`XP_057780195.1`	Pfam	`PF13812`	PPR_3	Repeat	412	470	8e-60	199.5	Pentatricopeptide repeat domain
`XP_057780195.1`	Pfam	`PF12854`	PPR_1	Repeat	419	450	1.4e-121	396.5	PPR repeat
`XP_057780195.1`	Pfam	`PF01535`	PPR	Repeat	426	455	4.4e-88	284.3	PPR repeat
`XP_057780195.1`	Pfam	`PF13041`	PPR_2	Repeat	430	471	9.6e-134	436.2	PPR repeat family
`XP_057780195.1`	Pfam	`PF13812`	PPR_3	Repeat	447	501	8e-60	199.5	Pentatricopeptide repeat domain
`XP_057780195.1`	Pfam	`PF12854`	PPR_1	Repeat	454	485	1.4e-121	396.5	PPR repeat
`XP_057780195.1`	Pfam	`PF13041`	PPR_2	Repeat	459	507	9.6e-134	436.2	PPR repeat family
`XP_057780195.1`	Pfam	`PF01535`	PPR	Repeat	461	491	4.4e-88	284.3	PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057924212.1
ATGAGACACTTCTCCACCTATCCCAGATTCGATTTTGGATCTATACGTGAGCCCAACGATGCCGTCGCTCTATTTCGGAAGATGATGAGAACGGAGCCGCTTCCTTCTGTTAAGCTTTTCTCGAAATTGCTGAGTGCTGTGGTGAAGCTGAAACAATACTCTGCTGCACTTCATCTGTTCGACAAAATGCTTCAAAGGGATGCTCCCATAAATCACTACACCTTGAGTATTGTGATTGATTGCTATTGCCGACTCAAAAG...

CDS

1 records

下载 CDS FASTA

LOC130998805
ATGAGACACTTCTCCACCTATCCCAGATTCGATTTTGGATCTATACGTGAGCCCAACGATGCCGTCGCTCTATTTCGGAAGATGATGAGAACGGAGCCGCTTCCTTCTGTTAAGCTTTTCTCGAAATTGCTGAGTGCTGTGGTGAAGCTGAAACAATACTCTGCTGCACTTCATCTGTTCGACAAAATGCTTCAAAGGGATGCTCCCATAAATCACTACACCTTGAGTATTGTGATTGATTGCTATTGCCGACTCAAAAG...

Protein

1 records

下载 Protein FASTA

XP_057780195.1
MRHFSTYPRFDFGSIREPNDAVALFRKMMRTEPLPSVKLFSKLLSAVVKLKQYSAALHLFDKMLQRDAPINHYTLSIVIDCYCRLKRPDFGFAILGSFFKRGYEPTVVTFTILIKGLLLVGRIPEAAKVLWKLSVYRLCEPDEQTYSTMINGICKAVGTLKALELLCVLEKEKGICKPDVYSYSALIDGLCKEGKVDDALQLFSSLGDKGISPDVVTYSSIIEGLGNRRRMDEAQDILKKMIADKVCPNVVTCNIFVTAW...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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