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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G004828

染色体: Chr08 坐标: 57527798-57531208 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G004828
名称SmilChr08G004828
描述probable leucine-rich repeat receptor-like protein kinase At1g35710
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向57527798 - 57531208 / -

ID 对照

NCBI Gene IDLOC130998815
GeneID130998815
locus_tag-
NCBI NameLOC130998815
原始查询LOC130998815

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述probable leucine-rich repeat receptor-like protein kinase At1g35710
产物probable leucine-rich repeat receptor-like protein kinase At1g35710
ArabidopsisAT4G08850 (AT4G08850)
Leucine-rich repeat receptor-like protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:826456]
identity=37.6; qcov=1.02; evalue=0; confidence=medium
RiceOs10g0119200
-
identity=38.1; qcov=1.03; evalue=0; confidence=medium
GOGO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0005886 (plasma membrane); GO:0006468 (protein phosphorylation); GO:0009755 (hormone-mediated signaling pathway)
KEGG-
PfamPF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF08263 (LRRNT_2); PF12799 (LRR_4); PF13516 (LRR_6); PF13855 (LRR_8); PF23598 (LRR_14)
InterPro-
eggNOG-
NRGeneID:130998815

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 1.00000 XP_057780204.1
2 Nucleus 细胞核 0.00000 XP_057780204.1
3 Chromosome 染色体 0.00000 XP_057780204.1
4 Centromere 着丝粒 0.00000 XP_057780204.1
5 Chromatin 染色质 0.00000 XP_057780204.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:57528014 G A EMS_canonical_SNV CDS_variant 3 A15,B132,C14
Chr8:57528026 G A EMS_canonical_SNV CDS_variant 5 A8,B113,B20,C41,C58
Chr8:57528028 G A EMS_canonical_SNV CDS_variant 3 B112,B61,C28
Chr8:57528099 G A EMS_canonical_SNV CDS_variant 2 B21,B55
Chr8:57528104 AT A 1bp_deletion frameshift_variant 1 B109
Chr8:57528104 AT A 1bp_deletion CDS_variant 1 B109
Chr8:57528114 C T EMS_canonical_SNV CDS_variant 1 B109
Chr8:57528116 C CA 1bp_insertion frameshift_variant 1 C78
Chr8:57528116 C CA 1bp_insertion CDS_variant 1 C78
Chr8:57528186 C T EMS_canonical_SNV CDS_variant 1 C76
Chr8:57528201 C T EMS_canonical_SNV CDS_variant 4 A8,B20,C41,C58
Chr8:57528205 C T EMS_canonical_SNV CDS_variant 4 A10,B2,B51,C3

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780204.1
1053 aa
N
1
526
1053
LRRNT_2
LRR_6
LRR_8
LRR_1
LRR_4
LRR_4
LRR_1
LRR_14
LRR_8
LRR_6
LRR_1
LRR_4
LRR_8
LRR_4
LRR_1
LRR_6
LRR_1
LRR_4
LRR_8
LRR_14
LRR_6
LRR_1
LRR_6
LRR_1
LRR_8
LRR_14
LRR_1
LRR_1
LRR_6
LRR_8
LRR_1
LRR_1
LRR_1
LRR_8
LRR_8
LRR_1
LRR_1
LRR_1
LRR_8
LRR_8
LRR_1
LRR_6
LRR_8
LRR_1
LRR_1
Pkinase
PK_Tyr_Ser-Thr
C
PF08263 LRRNT_2 36-53 aa PF13516 LRR_6 108-120 aa PF13855 LRR_8 108-169 aa PF00560 LRR_1 109-131 aa PF12799 LRR_4 109-145 aa PF12799 LRR_4 132-174 aa PF00560 LRR_1 133-156 aa PF23598 LRR_14 136-285 aa PF13855 LRR_8 154-193 aa PF13516 LRR_6 157-171 aa PF00560 LRR_1 158-180 aa PF12799 LRR_4 158-191 aa PF13855 LRR_8 175-217 aa PF12799 LRR_4 181-222 aa PF00560 LRR_1 182-204 aa PF13516 LRR_6 205-219 aa PF00560 LRR_1 206-228 aa PF12799 LRR_4 206-241 aa PF13855 LRR_8 206-265 aa PF23598 LRR_14 223-383 aa PF13516 LRR_6 228-241 aa PF00560 LRR_1 230-252 aa PF13516 LRR_6 253-266 aa PF00560 LRR_1 254-276 aa PF13855 LRR_8 254-313 aa PF23598 LRR_14 272-431 aa PF00560 LRR_1 278-300 aa PF00560 LRR_1 303-324 aa PF13516 LRR_6 324-337 aa PF13855 LRR_8 325-385 aa PF00560 LRR_1 326-348 aa PF00560 LRR_1 350-372 aa PF00560 LRR_1 374-396 aa PF13855 LRR_8 374-433 aa PF13855 LRR_8 397-457 aa PF00560 LRR_1 398-420 aa PF00560 LRR_1 422-444 aa PF00560 LRR_1 446-468 aa PF13855 LRR_8 446-505 aa PF13855 LRR_8 469-529 aa PF00560 LRR_1 470-492 aa PF13516 LRR_6 516-531 aa PF13855 LRR_8 517-577 aa PF00560 LRR_1 518-540 aa PF00560 LRR_1 543-561 aa PF00069 Pkinase 759-1028 aa PF07714 PK_Tyr_Ser-Thr 759-1030 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057780204.1 Pfam PF08263 LRRNT_2 Family 36 53 0.00017 22.5 Leucine rich repeat N-terminal domain
XP_057780204.1 Pfam PF13516 LRR_6 Repeat 108 120 1.4e-20 72.3 Leucine Rich repeat
XP_057780204.1 Pfam PF13855 LRR_8 Repeat 108 169 5.9e-65 215.6 Leucine rich repeat
XP_057780204.1 Pfam PF00560 LRR_1 Repeat 109 131 1e-66 207.0 Leucine Rich Repeat
XP_057780204.1 Pfam PF12799 LRR_4 Repeat 109 145 5.2e-61 202.0 Leucine Rich repeats (2 copies)
XP_057780204.1 Pfam PF12799 LRR_4 Repeat 132 174 5.2e-61 202.0 Leucine Rich repeats (2 copies)
XP_057780204.1 Pfam PF00560 LRR_1 Repeat 133 156 1e-66 207.0 Leucine Rich Repeat
XP_057780204.1 Pfam PF23598 LRR_14 Repeat 136 285 7.4e-56 190.1 Leucine-rich repeat region
XP_057780204.1 Pfam PF13855 LRR_8 Repeat 154 193 5.9e-65 215.6 Leucine rich repeat
XP_057780204.1 Pfam PF13516 LRR_6 Repeat 157 171 1.4e-20 72.3 Leucine Rich repeat
XP_057780204.1 Pfam PF00560 LRR_1 Repeat 158 180 1e-66 207.0 Leucine Rich Repeat
XP_057780204.1 Pfam PF12799 LRR_4 Repeat 158 191 5.2e-61 202.0 Leucine Rich repeats (2 copies)
XP_057780204.1 Pfam PF13855 LRR_8 Repeat 175 217 5.9e-65 215.6 Leucine rich repeat
XP_057780204.1 Pfam PF12799 LRR_4 Repeat 181 222 5.2e-61 202.0 Leucine Rich repeats (2 copies)
XP_057780204.1 Pfam PF00560 LRR_1 Repeat 182 204 1e-66 207.0 Leucine Rich Repeat
XP_057780204.1 Pfam PF13516 LRR_6 Repeat 205 219 1.4e-20 72.3 Leucine Rich repeat
XP_057780204.1 Pfam PF00560 LRR_1 Repeat 206 228 1e-66 207.0 Leucine Rich Repeat
XP_057780204.1 Pfam PF12799 LRR_4 Repeat 206 241 5.2e-61 202.0 Leucine Rich repeats (2 copies)
XP_057780204.1 Pfam PF13855 LRR_8 Repeat 206 265 5.9e-65 215.6 Leucine rich repeat
XP_057780204.1 Pfam PF23598 LRR_14 Repeat 223 383 7.4e-56 190.1 Leucine-rich repeat region
XP_057780204.1 Pfam PF13516 LRR_6 Repeat 228 241 1.4e-20 72.3 Leucine Rich repeat
XP_057780204.1 Pfam PF00560 LRR_1 Repeat 230 252 1e-66 207.0 Leucine Rich Repeat
XP_057780204.1 Pfam PF13516 LRR_6 Repeat 253 266 1.4e-20 72.3 Leucine Rich repeat
XP_057780204.1 Pfam PF00560 LRR_1 Repeat 254 276 1e-66 207.0 Leucine Rich Repeat
XP_057780204.1 Pfam PF13855 LRR_8 Repeat 254 313 5.9e-65 215.6 Leucine rich repeat
XP_057780204.1 Pfam PF23598 LRR_14 Repeat 272 431 7.4e-56 190.1 Leucine-rich repeat region
XP_057780204.1 Pfam PF00560 LRR_1 Repeat 278 300 1e-66 207.0 Leucine Rich Repeat
XP_057780204.1 Pfam PF00560 LRR_1 Repeat 303 324 1e-66 207.0 Leucine Rich Repeat
XP_057780204.1 Pfam PF13516 LRR_6 Repeat 324 337 1.4e-20 72.3 Leucine Rich repeat
XP_057780204.1 Pfam PF13855 LRR_8 Repeat 325 385 5.9e-65 215.6 Leucine rich repeat
XP_057780204.1 Pfam PF00560 LRR_1 Repeat 326 348 1e-66 207.0 Leucine Rich Repeat
XP_057780204.1 Pfam PF00560 LRR_1 Repeat 350 372 1e-66 207.0 Leucine Rich Repeat
XP_057780204.1 Pfam PF00560 LRR_1 Repeat 374 396 1e-66 207.0 Leucine Rich Repeat
XP_057780204.1 Pfam PF13855 LRR_8 Repeat 374 433 5.9e-65 215.6 Leucine rich repeat
XP_057780204.1 Pfam PF13855 LRR_8 Repeat 397 457 5.9e-65 215.6 Leucine rich repeat
XP_057780204.1 Pfam PF00560 LRR_1 Repeat 398 420 1e-66 207.0 Leucine Rich Repeat
XP_057780204.1 Pfam PF00560 LRR_1 Repeat 422 444 1e-66 207.0 Leucine Rich Repeat
XP_057780204.1 Pfam PF00560 LRR_1 Repeat 446 468 1e-66 207.0 Leucine Rich Repeat
XP_057780204.1 Pfam PF13855 LRR_8 Repeat 446 505 5.9e-65 215.6 Leucine rich repeat
XP_057780204.1 Pfam PF13855 LRR_8 Repeat 469 529 5.9e-65 215.6 Leucine rich repeat
XP_057780204.1 Pfam PF00560 LRR_1 Repeat 470 492 1e-66 207.0 Leucine Rich Repeat
XP_057780204.1 Pfam PF13516 LRR_6 Repeat 516 531 1.4e-20 72.3 Leucine Rich repeat
XP_057780204.1 Pfam PF13855 LRR_8 Repeat 517 577 5.9e-65 215.6 Leucine rich repeat
XP_057780204.1 Pfam PF00560 LRR_1 Repeat 518 540 1e-66 207.0 Leucine Rich Repeat
XP_057780204.1 Pfam PF00560 LRR_1 Repeat 543 561 1e-66 207.0 Leucine Rich Repeat
XP_057780204.1 Pfam PF00069 Pkinase Domain 759 1028 3.4e-44 151.9 Protein kinase domain
XP_057780204.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 759 1030 1.4e-41 143.3 Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057924221.1
ATGGATTTTGGGATAAGTAGTCGCATTTTGATCATGGCCATAGTGTTGATGAAAGCAGCAGAAGCAAGCATGAGCAGAGAGATGCAGGCATTGATGACATTTAGGTGGCCTCACAACTCCACAACTCATCACTGCAATTGGACTGGCATTACTTGTGATGATGCTGGTCATGTTGCGGCGATGAGCCTCCAAGTTTGCCCTCATCCTACTACTCTTCTTAGTTTAAACCATTTTGATGTGTTTGCTTTTCCACATCTCAC...

CDS

1 records

下载 CDS FASTA
LOC130998815
ATGGATTTTGGGATAAGTAGTCGCATTTTGATCATGGCCATAGTGTTGATGAAAGCAGCAGAAGCAAGCATGAGCAGAGAGATGCAGGCATTGATGACATTTAGGTGGCCTCACAACTCCACAACTCATCACTGCAATTGGACTGGCATTACTTGTGATGATGCTGGTCATGTTGCGGCGATGAGCCTCCAAGTTTGCCCTCATCCTACTACTCTTCTTAGTTTAAACCATTTTGATGTGTTTGCTTTTCCACATCTCAC...

Protein

1 records

下载 Protein FASTA
XP_057780204.1
MDFGISSRILIMAIVLMKAAEASMSREMQALMTFRWPHNSTTHHCNWTGITCDDAGHVAAMSLQVCPHPTTLLSLNHFDVFAFPHLTRIHLTSCCLQGTIPPQIGYLSNLTHLDLSDNQLYSELPLSLANLTNLQVLDISYNGYISGVIPPELGSLSKLTHLDLSHNPLNGDLPHSLANLTNLQVLDISYNGIVGVIPPELGSLSKLTHLDLSHNPLNGDLPHSLSNLTNLQVLDLSYNRIVGAILCEIGSLSKLTHLDL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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