当前解析结果
SmilChr08G004962| 统一新 Gene ID | SmilChr08G004962 |
|---|---|
| 名称 | SmilChr08G004962 |
| 描述 | secreted RxLR effector protein 161-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 58432641 - 58433219 / - |
| NCBI Gene ID | LOC130998842 |
|---|---|
| GeneID | 130998842 |
| locus_tag | - |
| NCBI Name | LOC130998842 |
| 原始查询 | LOC130998842 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | secreted RxLR effector protein 161-like |
| 产物 | secreted RxLR effector protein 161-like |
| Arabidopsis | AT4G23160 (CRK8)cysteine-rich RECEPTOR-like kinase [Source:NCBI gene (formerly Entrezgene);Acc:828415] identity=39.5; qcov=0.766; evalue=3.26e-31; confidence=medium |
| Rice | Os08g0125300- identity=52.4; qcov=0.995; evalue=1.83e-58; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998842 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057780230.1 |
| 2 | Nucleus | 细胞核 | 0.60000 | XP_057780230.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057780230.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057780230.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057780230.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:58432664 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B135,C2,C62 |
Chr8:58432703 |
G |
A |
EMS_canonical_SNV | stop_gained | 39 | A15,A18,A21,A8,B101,B110,B113,B126,B127,B135,B20,B21,B25,B27,B3,B33,B4,B44,B55,B66,B68,B87,B88,B9,B91,B93,B97,B98,C26,C29,C3,C33,C46,C64,C66,C80,D2,D3,D5 |
Chr8:58432764 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B104,B120,B67,C54 |
Chr8:58432782 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A3,B62,B8,C42,C47 |
Chr8:58432802 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B113,D4,D7 |
Chr8:58432817 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | B50 |
Chr8:58432817 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B50 |
Chr8:58432831 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B1,B13,D11 |
Chr8:58432844 |
GCA |
G |
2bp_deletion | frameshift_variant | 2 | B112,B77 |
Chr8:58432844 |
GCA |
G |
2bp_deletion | CDS_variant | 2 | B112,B77 |
Chr8:58432866 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr8:58432938 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B59,B80,C58 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。