Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及有 accession 序列支持的文献基因名查询；未闭环名称仅提供候选导航。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G004141`

染色体: Chr08 坐标: 50421984-50425155 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G004141`
名称	SmilChr08G004141
描述	zinc finger CCCH domain-containing protein 40-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	50421984 - 50425155 / `-`

ID 对照

NCBI Gene ID	`LOC130998887`
GeneID	`130998887`
locus_tag	`-`
NCBI Name	`LOC130998887`
原始查询	`LOC130998887`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	zinc finger CCCH domain-containing protein 40-like
产物	zinc finger CCCH domain-containing protein 40-like
Arabidopsis	`AT1G07360` (MAC5A) CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:837248] identity=75.56; qcov=0.846; evalue=0.0; confidence=high
Rice	`Os06g0170500` (OsC3H40) - identity=83.5; qcov=0.814; evalue=0.0; confidence=high
GO	GO:0000974 (Prp19 complex); GO:0017070 (U6 snRNA binding); GO:0036002 (pre-mRNA binding); GO:0046872 (metal ion binding); GO:0071006 (U2-type catalytic step 1 spliceosome); GO:0071007 (U2-type catalytic step 2 spliceosome)
KEGG	smil03040 (Spliceosome - Salvia miltiorrhiza (redroot sage))
Pfam	PF00076 (RRM_1); PF16131 (Torus); PF21369 (STL11_N)
InterPro	-
eggNOG	-
NR	GeneID:130998887

打开注释模块

非零投票定位候选（最多五项）

Rank	定位位置	中文	五折投票比例	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057780297.1`
2	Nucleoplasm	核质	1.00000	`XP_057780297.1`
3	Cytoplasm	细胞质	0.60000	`XP_057780297.1`
4	Nuclear speckle	核斑点	0.20000	`XP_057780297.1`
5	Cytosol	细胞质基质	0.20000	`XP_057780297.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:50422203`	`G`	`A`	EMS_canonical_SNV	stop_gained	65	A10,A14,A15,A16,A20,A22,A5,B10,B100,B101,B104,B105,B113,B12,B120,B121,B134,B138,B139,B17,B22,B25,B27,B45,B48,B52,B53,B54,B57,B60,B61,B62,B65,B67,B69,B78,B90,B92,B95,C14,C20,C25,C27,C34,C37,C39,C40,C42,C48,C49,C5,C51,C6,C63,C64,C66,C67,C71,C78,C79,C81,C82,C85,D1,D2
`Chr8:50422323`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	B86
`Chr8:50422323`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B86
`Chr8:50422370`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C87
`Chr8:50422401`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	C40
`Chr8:50422401`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C40
`Chr8:50422476`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr8:50422633`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B107
`Chr8:50422707`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B52
`Chr8:50422775`	`TC`	`T`	1bp_deletion	frameshift_variant	1	B70
`Chr8:50422775`	`TC`	`T`	1bp_deletion	CDS_variant	1	B70
`Chr8:50423483`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B126,C47,D8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780297.1

474 aa

237

474

STL11_N

Torus

RRM_1

PF21369 STL11_N 20-109 aa PF16131 Torus 155-193 aa PF00076 RRM_1 230-286 aa

XP_057780298.1

474 aa

237

474

STL11_N

Torus

RRM_1

PF21369 STL11_N 20-109 aa PF16131 Torus 155-193 aa PF00076 RRM_1 230-286 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057780297.1`	Pfam	`PF21369`	STL11_N	Domain	20	109	2.6e-30	105.6	STL11, N-terminal
`XP_057780297.1`	Pfam	`PF16131`	Torus	Domain	155	193	5.3e-07	30.9	Torus domain
`XP_057780297.1`	Pfam	`PF00076`	RRM_1	Domain	230	286	7.3e-12	45.7	RNA recognition motif
`XP_057780298.1`	Pfam	`PF21369`	STL11_N	Domain	20	109	2.6e-30	105.6	STL11, N-terminal
`XP_057780298.1`	Pfam	`PF16131`	Torus	Domain	155	193	5.3e-07	30.9	Torus domain
`XP_057780298.1`	Pfam	`PF00076`	RRM_1	Domain	230	286	7.3e-12	45.7	RNA recognition motif

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057924314.1
AGAATTCGAATTCGAAATAATAATAGGATATCCAAACGCGGCGTTACCCCAATAACCCTCACTTGTCAATCGCGGGATTCATTTTTCTCGCTCATCCTCTTCAATTCTTCTCCGCCCTCTCGACGTCGCACCTCCGCCGCCACTGTCTACAAACGCCGCCGCCGCCCGCAACTGCTTGTCTTGCTATCCTTATATTCGCACCTACGGGAGCTCGTATTTTCGTGGACAAACAACTACTAGGATAAATAATTTAAGTTCAG...

XM_057924315.1
AATAATAATAGGATATCCAAACGCGGCGTTACCCCAATAACCCTCACTTGTCAATCGCGGGATTCATTTTTCTCGCTCATCCTCTTCAATTCTTCTCCGCCCTCTCGACGTCGCACCTCCGCCGCCACTGTCTACAAACGCCGCCGCCGCCCGCAACTGCTTGTCTTGCTATCCTTATATTCGCACCTACGGGAGCTCGTATTTTCGTGGACAAACAACTACTAGGTACCGCATCGAGTCCAATTTTAGGGTTTCCGTTG...

CDS

2 records

下载 CDS FASTA

lcl|NC_080394.1_cds_XP_057780297.1_45334
ATGGCACACAGGCTGCTGAGGGACGCGGAAGCTGATGGGTGGGAGCGGTCTGATTTCCCAATTATATGTGAATCGTGCCTTGGCGACAATCCATACGTCCGAATGACAAAAGCTGATTATGATAAGGAGTGTAAGATTTGCACTCGGCCATTTACGGTATTCAGGTGGAGACCTGGTCGTGATGCAAGATACAAGAAGTCTGAGATATGCCAGACTTGTAGTAAGCTGAAAAATGTTTGTCAGGTTTGCCTTTTGGATCT...

lcl|NC_080394.1_cds_XP_057780298.1_45335
ATGGCACACAGGCTGCTGAGGGACGCGGAAGCTGATGGGTGGGAGCGGTCTGATTTCCCAATTATATGTGAATCGTGCCTTGGCGACAATCCATACGTCCGAATGACAAAAGCTGATTATGATAAGGAGTGTAAGATTTGCACTCGGCCATTTACGGTATTCAGGTGGAGACCTGGTCGTGATGCAAGATACAAGAAGTCTGAGATATGCCAGACTTGTAGTAAGCTGAAAAATGTTTGTCAGGTTTGCCTTTTGGATCT...

Protein

2 records

下载 Protein FASTA

XP_057780297.1
MAHRLLRDAEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGRDARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAEEHDRKARAGIDYESSFGKARPNDTILKLQRTTPYYKRNRAHVCSFYVRGQCTRGPECPYRHEMPVEGELSQQNIKDRYYGVNDPVAMKLLNKAGEMPSLEPPDDESIRTLYVGGLDARITEQDLRDNFYAHGEIESVKMV...

XP_057780298.1
MAHRLLRDAEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGRDARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAEEHDRKARAGIDYESSFGKARPNDTILKLQRTTPYYKRNRAHVCSFYVRGQCTRGPECPYRHEMPVEGELSQQNIKDRYYGVNDPVAMKLLNKAGEMPSLEPPDDESIRTLYVGGLDARITEQDLRDNFYAHGEIESVKMV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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