Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G004164

染色体: Chr08 坐标: 50938505-50945105 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G004164
名称SmilChr08G004164
描述uncharacterized protein At4g06598-like
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向50938505 - 50945105 / -

ID 对照

NCBI Gene IDLOC130998902
GeneID130998902
locus_tag-
NCBI NameLOC130998902
原始查询LOC130998902

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
描述Basic-leucine zipper (bZIP) transcription factor family protein [Source:NCBI gene (formerly Entrezgene);Acc:842178]; symbol=AT1G58110; hit=AT1G58110; species=arabidopsis; confidence=high
产物Basic-leucine zipper (bZIP) transcription factor family protein [Source:NCBI gene (formerly Entrezgene);Acc:842178]; symbol=AT1G58110; hit=AT1G58110; species=arabidopsis; confidence=high
ArabidopsisAT1G58110 (AT1G58110)
Basic-leucine zipper (bZIP) transcription factor family protein [Source:NCBI gene (formerly Entrezgene);Acc:842178]
identity=51.9; qcov=1; evalue=1.23e-111; confidence=high
RiceOs12g0194600 (OsbZIP85)
-
identity=45.5; qcov=1.03; evalue=1.16e-76; confidence=high
GOGO:0003700 (DNA-binding transcription factor activity); GO:0006355 (regulation of DNA-templated transcription)
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:130998902

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057780319.1
2 Chromosome 染色体 0.00000 XP_057780319.1
3 Centromere 着丝粒 0.00000 XP_057780319.1
4 Chromatin 染色质 0.00000 XP_057780319.1
5 Telomere 端粒 0.00000 XP_057780319.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:50939059 G A EMS_canonical_SNV stop_gained 1 B130
Chr8:50939059 G A EMS_canonical_SNV CDS_variant 1 B130
Chr8:50939735 G A EMS_canonical_SNV CDS_variant 2 B41,C70

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA
XM_057924337.1
ACAAGGGGCAAAGCTCAATATTCTCCTACTCTTTTTTCACCATAAGGCGTCAACCCTCTGCAAGTAGTGTAGAGAGAGAAATTTACAGTAAGAAACCAAAAACCATCTCAGAGAGGGCTTCCGGAGAAGAAGAAACCATAGGATTTATTTATTTTGTGTGTCGATTATTTTCAATTTTTGGTTTATTATATCTCACATTGTCAAGATCTTACTTCGTAATTGTCTAAGGTACTGGCCTCCTCAGCTATGTCAAACTCCAA...
XM_057924341.1
CACCATAAGGCGTCAACCCTCTGCAAGTAGTGTAGAGAGAGAAATTTACAGTAAGAAACCAAAAACCATCTCAGAGAGGGCTTCCGGAGAAGAAGAAACCATAGGATTTATTTATTTTGTGTGTCGATTATTTTCAATTTTTGGTTTATTATATCTCACATTGTCAAGATCTTACTTCGTAATTGTCTAAGGTACTGGCCTCCTCAGCTATGTCAAACTCCAAGGGACCATCTACTGTTAGAAACATGATGTACAATGGG...

CDS

5 records

下载 CDS FASTA
LOC130998902
ATGTCAAACTCCAAGGGACCATCTACTGTTAGAAACATGATGTACAATGGGAAGAATCCGTTATTGCCTCCTAAAAGTCCATTTCCTAGCATATCTCCATCATATGCTGAATACATTCCTACTTCAGTGATTGGTCCAAAAGCTCTTCCAAAGCCCAGAGACGGAAGTCCACATCATCAACGTACTTCTTCTGAAAGTTTTTTGATAGAGGAACAACCGTCTTGGCTAGATGAACTCCTTGATGAACCAGAAACGCCTGT...
LOC130998902
ATGTCAAACTCCAAGGGACCATCTACTGTTAGAAACATGATGTACAATGGGAAGAATCCGTTATTGCCTCCTAAAAGTCCATTTCCTAGCATATCTCCATCATATGCTGAATACATTCCTACTTCAGTGATTGGTCCAAAAGCTCTTCCAAAGCCCAGAGACGGAAGTCCACATCATCAACGTACTTCTTCTGAAAGTTTTTTGATAGAGGAACAACCGTCTTGGCTAGATGAACTCCTTGATGAACCAGAAACGCCTGT...

Protein

5 records

下载 Protein FASTA
XP_057780319.1
MSNSKGPSTVRNMMYNGKNPLLPPKSPFPSISPSYAEYIPTSVIGPKALPKPRDGSPHHQRTSSESFLIEEQPSWLDELLDEPETPVRKGGHRRSSSDSFAYIDTTNAGSMNYAAQDDIKFKNMIPLPSWGSQDFDFQRDMRQSSFYLDSNPSGRTKNKPWDAPVNSIAPPRSLPSRDVATIQNAGTVNTSLDVDRNPTSSAQKSDVESVSQDPKGSFEKKDTHVKNLASETDTKRAKQQFAQRSRVRKLQYIAELERHV...
XP_057780320.1
MSNSKGPSTVRNMMYNGKNPLLPPKSPFPSISPSYAEYIPTSVIGPKALPKPRDGSPHHQRTSSESFLIEEQPSWLDELLDEPETPVRKGGHRRSSSDSFAYIDTTNAGSMNYAAQDDIKFKNMIPLPSWGSQDFDFQRDMRQSSFYLDSNPSGRTKNKPWDAPVNSIAPPRSLPSRDVATIQNAGTVNTSLDVDRNPTSSAQKSDVESVSQDPKGSFEKKDTHVKNLASETDTKRAKQQFAQRSRVRKLQYIAELERHV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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