Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G004175`

染色体: Chr08 坐标: 51095295-51098847 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G004175`
名称	SmilChr08G004175
描述	protein trichome birefringence-like 25
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	51095295 - 51098847 / `-`

ID 对照

NCBI Gene ID	`LOC130998910`
GeneID	`130998910`
locus_tag	`-`
NCBI Name	`LOC130998910`
原始查询	`LOC130998910`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein trichome birefringence-like 25
产物	protein trichome birefringence-like 25
Arabidopsis	`AT1G01430` (TBL25) TRICHOME BIREFRINGENCE-LIKE 25 [Source:NCBI gene (formerly Entrezgene);Acc:837247] identity=52.2; qcov=1.03; evalue=3.37e-157; confidence=high
Rice	`Os06g0524400` (OsTBL49) - identity=55.5; qcov=0.882; evalue=1.67e-153; confidence=high
GO	GO:0005794 (Golgi apparatus); GO:0016413 (O-acetyltransferase activity)
KEGG	-
Pfam	PF13839 (PC-Esterase); PF14416 (PMR5N)
InterPro	-
eggNOG	-
NR	GeneID:130998910

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	1.00000	`XP_057780329.1`
2	Nucleus	细胞核	0.00000	`XP_057780329.1`
3	Chromosome	染色体	0.00000	`XP_057780329.1`
4	Centromere	着丝粒	0.00000	`XP_057780329.1`
5	Chromatin	染色质	0.00000	`XP_057780329.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:51095395`	`G`	`GAT`	2bp_insertion	frameshift_variant	18	B131,B135,B139,B14,B15,B2,B52,B72,B90,B93,B96,C34,C38,C60,C64,C70,C83,C84
`Chr8:51095476`	`G`	`GA`	1bp_insertion	frameshift_variant	10	A8,A9,B104,B14,B22,B62,C49,C69,C8,D3
`Chr8:51095527`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B107
`Chr8:51095543`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	C28,C33,C44,C73
`Chr8:51095617`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C46
`Chr8:51095629`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B109
`Chr8:51095645`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B114,B50,C3
`Chr8:51095663`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B27,B46
`Chr8:51095674`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A19,A23,B137,B79,C53
`Chr8:51095694`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B44
`Chr8:51095729`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B136
`Chr8:51095744`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780329.1

416 aa

208

416

PMR5N

PC-Esterase

PF14416 PMR5N 67-118 aa PF13839 PC-Esterase 120-410 aa

XP_057780330.1

415 aa

208

415

PMR5N

PC-Esterase

PF14416 PMR5N 66-117 aa PF13839 PC-Esterase 119-409 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057780329.1`	Pfam	`PF14416`	PMR5N	Domain	67	118	1.2e-21	77.4	PMR5 N terminal Domain
`XP_057780329.1`	Pfam	`PF13839`	PC-Esterase	Family	120	410	4.9e-90	303.0	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
`XP_057780330.1`	Pfam	`PF14416`	PMR5N	Domain	66	117	1.7e-21	77.0	PMR5 N terminal Domain
`XP_057780330.1`	Pfam	`PF13839`	PC-Esterase	Family	119	409	4.9e-90	303.0	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057924346.1
CTATTTTTATTTTTTTCCTAAATCATAATTATAATAATATAAGTAGTTTTTAATTCTTTTTTTTTTTTTCAGATAGCGACATGCCAATTCAAGGAAGAAATGCAATGAATGTGTAGATGATAACACCATTTTGCATAACTATATCAACCACCCTCATCTTTATTCATTTCTGCATTAAAGCTGAACTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAA...

XM_057924347.1
TATAATAATATAAGTAGTTTTTAATTCTTTTTTTTTTTTTCAGATAGCGACATGCCAATTCAAGGAAGAAATGCAATGAATGTGTAGATGATAACACCATTTTGCATAACTATATCAACCACCCTCATCTTTATTCATTTCTGCATTAAAGCTGAACTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATGAAACAAATCAAAAGCAACAACTTATTC...

CDS

2 records

下载 CDS FASTA

LOC130998910
ATGAAACAAATCAAAAGCAACAACTTATTCTCATCAGCTTTGGTGAAATTTGCAGTGTGTTTTCTGCTTCTATGCATTTCTTACCGGTTATTATCTTCAAGTTTTGTGCGGTTTCCTCTTGAGGTTTCAGATCATGAGGCTGCGGCGGCGGCGGCGGTTGAGCCACCCCAATTCGTAGACGACCTCTTGCTCAACGGCTGTGATTTATTCAATGGGGATTGGATCCCAGATTCTGATGGCCCATTCTACAGCAACAGCAG...

LOC130998910
ATGAAACAAATCAAAAGCAACAACTTATTCTCATCAGCTTTGGTGAAATTTGCAGTGTGTTTTCTGCTTCTATGCATTTCTTACCGGTTATTATCTTCAAGTTTTGTGCGGTTTCCTCTTGAGGTTTCAGATCATGAGGCTGCGGCGGCGGCGGCGGTTGAGCCACCCCAATTCGTAGACGACCTCTTGCTCAACGAAGGCTGTGATTTATTCAATGGGGATTGGATCCCAGATTCTGATGGCCCATTCTACAGCAACAG...

Protein

2 records

下载 Protein FASTA

XP_057780329.1
MKQIKSNNLFSSALVKFAVCFLLLCISYRLLSSSFVRFPLEVSDHEAAAAAAVEPPQFVDDLLLNEGCDLFNGDWIPDSDGPFYSNSSCRTIEAPQNCMRNGRPDLGYLYWRWKPKDCILPKLDAKRFLEMMKDKSLAFVGDSIMRNHVQSLLCVLSQVEEAVDIYHDEPYKNRRWSFPSHNFTVFVVWAPFLTKASTFENDDGVSSGIIQLHIDEPDTIWTDQYEDFDHVVIGGGQWFLKYAIYYENNTILGCHGCHGS...

XP_057780330.1
MKQIKSNNLFSSALVKFAVCFLLLCISYRLLSSSFVRFPLEVSDHEAAAAAAVEPPQFVDDLLLNGCDLFNGDWIPDSDGPFYSNSSCRTIEAPQNCMRNGRPDLGYLYWRWKPKDCILPKLDAKRFLEMMKDKSLAFVGDSIMRNHVQSLLCVLSQVEEAVDIYHDEPYKNRRWSFPSHNFTVFVVWAPFLTKASTFENDDGVSSGIIQLHIDEPDTIWTDQYEDFDHVVIGGGQWFLKYAIYYENNTILGCHGCHGSN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器