当前解析结果
SmilChr08G004177| 统一新 Gene ID | SmilChr08G004177 |
|---|---|
| 名称 | SmilChr08G004177 |
| 描述 | protein ENHANCED DISEASE RESISTANCE 4-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 51103971 - 51108264 / - |
| NCBI Gene ID | LOC130998914 |
|---|---|
| GeneID | 130998914 |
| locus_tag | - |
| NCBI Name | LOC130998914 |
| 原始查询 | LOC130998914 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein ENHANCED DISEASE RESISTANCE 4-like |
| 产物 | protein ENHANCED DISEASE RESISTANCE 4-like |
| Arabidopsis | AT2G46380 (AT2G46380)extra-large G-like protein, putative (DUF3133) [Source:NCBI gene (formerly Entrezgene);Acc:819246] identity=35.6; qcov=1.03; evalue=3.76e-128; confidence=medium |
| Rice | Os02g0258300- identity=30; qcov=1.07; evalue=1.21e-100; confidence=low |
| GO | GO:1900150 (regulation of defense response to fungus) |
| KEGG | - |
| Pfam | PF11331 (Zn_ribbon_12); PF22910 (EDR4-like_1st) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998914 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057780332.1 |
| 2 | Nucleus | 细胞核 | 0.20000 | XP_057780332.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057780332.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057780332.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057780332.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:51104633 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B46 |
Chr8:51104645 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B122 |
Chr8:51104723 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | D11,D3 |
Chr8:51104735 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B33,B49,C32,C68 |
Chr8:51104812 |
C |
CTA |
2bp_insertion | frameshift_variant | 1 | B130 |
Chr8:51104812 |
C |
CTA |
2bp_insertion | CDS_variant | 1 | B130 |
Chr8:51104927 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A24,A7,B135,B67,C60 |
Chr8:51105141 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B100 |
Chr8:51105191 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A15,B99,C87 |
Chr8:51105198 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C83 |
Chr8:51105275 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B33,B49,C32,C68 |
Chr8:51105375 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A11,B121,C80,D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057780332.1PF22910
EDR4-like_1st 6-38 aa
PF11331
Zn_ribbon_12 407-450 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057780332.1 |
Pfam | PF22910 |
EDR4-like_1st | Domain | 6 | 38 | 2.3e-19 | 69.4 | Enhanced disease resistance 4-like, N-terminal domain |
XP_057780332.1 |
Pfam | PF11331 |
Zn_ribbon_12 | Domain | 407 | 450 | 2.8e-17 | 62.9 | EDR4 zinc-ribbon domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。