Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G004202

染色体: Chr08 坐标: 51384774-51386769 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G004202
名称SmilChr08G004202
描述uncharacterized SmilChr08G004202
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向51384774 - 51386769 / -

ID 对照

NCBI Gene IDLOC130998937
GeneID130998937
locus_tag-
NCBI NameLOC130998937
原始查询LOC130998937

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述Lactoylglutathione lyase / glyoxalase I family protein [Source:NCBI gene (formerly Entrezgene);Acc:834167]; symbol=AT5G41650; hit=AT5G41650; species=arabidopsis; confidence=high
产物Lactoylglutathione lyase / glyoxalase I family protein [Source:NCBI gene (formerly Entrezgene);Acc:834167]; symbol=AT5G41650; hit=AT5G41650; species=arabidopsis; confidence=high
ArabidopsisAT5G41650 (AT5G41650)
Lactoylglutathione lyase / glyoxalase I family protein [Source:NCBI gene (formerly Entrezgene);Acc:834167]
identity=74.4; qcov=1; evalue=2.79e-65; confidence=high
RiceOs06g0158700 (KMK0024M20.36)
-
identity=71.7; qcov=0.966; evalue=6e-59; confidence=high
GO-
KEGG-
PfamPF00903 (Glyoxalase)
InterPro-
eggNOG-
NRGeneID:130998937

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytosol 细胞质基质 1.00000 XP_057780357.1
2 Cytoplasm 细胞质 0.80000 XP_057780358.1
3 Nucleus 细胞核 0.00000 XP_057780357.1
4 Chromosome 染色体 0.00000 XP_057780357.1
5 Centromere 着丝粒 0.00000 XP_057780357.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:51385141 G A EMS_canonical_SNV CDS_variant 3 A15,B53,C82
Chr8:51385156 C T EMS_canonical_SNV CDS_variant 1 B1
Chr8:51385268 G A EMS_canonical_SNV CDS_variant 2 B16,B2
Chr8:51385354 G A EMS_canonical_SNV CDS_variant 1 B44

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057780357.1
128 aa
N
1
64
128
Glyoxalase
C
PF00903 Glyoxalase 10-118 aa
XP_057780358.1
117 aa
N
1
58
117
Glyoxalase
C
PF00903 Glyoxalase 10-107 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057780357.1 Pfam PF00903 Glyoxalase Domain 10 118 5.1e-06 27.6 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
XP_057780358.1 Pfam PF00903 Glyoxalase Domain 10 107 5e-08 34.1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XR_009093348.1
AAATATATAAACGAAAAAGTGACGCAGGCAGCTAGAAGCCTAGAACGCTAAAGTTAATGAAAAGGGGCGAATAATATCTAGAAAAATTGCAGCGACGTGATTTACGACTCAAAAATCGTCGGAATCTCCCATTTGCAACGACGAGGGATTGCTGATGGCGGCAGCGACTTTCAGATACTTGGTGCAGCTACACCGAGACGTTCCGAAAGCGGCGAGATTCTATTCGGAGGGCCTCGGCTTCACCATTGATGTCTGCACTC...
XM_057924374.1
GTGGACGGCGGAGGCATCAGCCGGAGATCCCGACATCTCCGAGCCGCGTGCGAGATGGCGAGAGAGCGCGAAACCGAACACGTTGAAGGCGAAGCTGATTGAAGCAAGGCTAGAAGGGCAGAAATCTCGTACTTGGAAAGCGACGTGATTTACGACTCAAAAATCGTCGGAATCTCCCATTTGCAACGACGAGGGATTGCTGATGGCGGCAGCGACTTTCAGATACTTGGTGCAGCTACACCGAGACGTTCCGAAAGCGG...

CDS

2 records

下载 CDS FASTA
LOC130998937
ATGGCGGCAGCGACTTTCAGATACTTGGTGCAGCTACACCGAGACGTTCCGAAAGCGGCGAGATTCTATTCGGAGGGCCTCGGCTTCACCATTGATGTCTGCACTCTGCGATGGGCCGAGCTCCACTCCGGCCCGCTCAAGCTCGCCCTCCTCCATAATCCCCGCGACCATGTTGAAAACAAGGGTTATTCATCGCTCCTGTCATTTACAGTAACAGACATCAATAGTTCTGTGACGAAGCTGATGACCTTAGGTGCCGA...
LOC130998937
ATGGCGGCAGCGACTTTCAGATACTTGGTGCAGCTACACCGAGACGTTCCGAAAGCGGCGAGATTCTATTCGGAGGGCCTCGGCTTCACCATTGATGTCTGCACTCTGCGATGGGCCGAGCTCCACTCCGGCCCGCTCAAGCTCGCCCTCCTCCATAATCCCCGCAATGTTATGACTTTTTTGTTCAAACTTCAAAGCGACCATGTTGAAAACAAGGGTTATTCATCGCTCCTGTCATTTACAGTAACAGACATCAATAG...

Protein

2 records

下载 Protein FASTA
XP_057780357.1
MAAATFRYLVQLHRDVPKAARFYSEGLGFTIDVCTLRWAELHSGPLKLALLHNPRNVMTFLFKLQSDHVENKGYSSLLSFTVTDINSSVTKLMTLGAELDGPIKHEIHGKVAAMRCADGHVLGLYEPA
XP_057780358.1
MAAATFRYLVQLHRDVPKAARFYSEGLGFTIDVCTLRWAELHSGPLKLALLHNPRDHVENKGYSSLLSFTVTDINSSVTKLMTLGAELDGPIKHEIHGKVAAMRCADGHVLGLYEPA

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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