Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G004214`

染色体: Chr08 坐标: 51515811-51521631 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G004214`
名称	SmilChr08G004214
描述	uncharacterized SmilChr08G004214
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	51515811 - 51521631 / `+`

ID 对照

NCBI Gene ID	`LOC130998945`
GeneID	`130998945`
locus_tag	`-`
NCBI Name	`LOC130998945`
原始查询	`LOC130998945`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	glycosyl transferase family 1 protein [Source:NCBI gene (formerly Entrezgene);Acc:828040]; symbol=AT4G01210; hit=AT4G01210; species=arabidopsis; confidence=high
产物	glycosyl transferase family 1 protein [Source:NCBI gene (formerly Entrezgene);Acc:828040]; symbol=AT4G01210; hit=AT4G01210; species=arabidopsis; confidence=high
Arabidopsis	`AT4G01210` (AT4G01210) glycosyl transferase family 1 protein [Source:NCBI gene (formerly Entrezgene);Acc:828040] identity=59.7; qcov=1.01; evalue=0; confidence=high
Rice	`Os01g0622000` - identity=62.8; qcov=0.169; evalue=4.27e-65; confidence=weak
GO	GO:0016757 (glycosyltransferase activity)
KEGG	-
Pfam	PF00534 (Glycos_transf_1); PF13692 (Glyco_trans_1_4)
InterPro	-
eggNOG	-
NR	GeneID:130998945

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	1.00000	`XP_057780367.1`
2	Golgi stack	高尔基堆	0.20000	`XP_057780367.1`
3	Nucleus	细胞核	0.00000	`XP_057780368.1`
4	Chromosome	染色体	0.00000	`XP_057780368.1`
5	Centromere	着丝粒	0.00000	`XP_057780368.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:51516293`	`G`	`GT`	1bp_insertion	frameshift_variant	1	B88
`Chr8:51516293`	`G`	`GT`	1bp_insertion	CDS_variant	1	B88
`Chr8:51516780`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D2
`Chr8:51518119`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B6,C59,D11
`Chr8:51518440`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B129
`Chr8:51518570`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B78
`Chr8:51518576`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr8:51519225`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B124
`Chr8:51519235`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr8:51519260`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr8:51519508`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A18
`Chr8:51519531`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780367.1

1032 aa

516

1032

Glyco_trans_1_4

Glycos_transf_1

PF13692 Glyco_trans_1_4 376-490 aa PF00534 Glycos_transf_1 379-493 aa

XP_057780368.1

857 aa

428

857

Glyco_trans_1_4

Glycos_transf_1

PF13692 Glyco_trans_1_4 201-315 aa PF00534 Glycos_transf_1 204-318 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057780367.1`	Pfam	`PF13692`	Glyco_trans_1_4	Domain	376	490	2.3e-11	44.9	Glycosyl transferases group 1
`XP_057780367.1`	Pfam	`PF00534`	Glycos_transf_1	Domain	379	493	1e-10	42.1	Glycosyl transferases group 1
`XP_057780368.1`	Pfam	`PF13692`	Glyco_trans_1_4	Domain	201	315	1.5e-11	45.4	Glycosyl transferases group 1
`XP_057780368.1`	Pfam	`PF00534`	Glycos_transf_1	Domain	204	318	7.7e-11	42.5	Glycosyl transferases group 1

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057924384.1
CACAAAACCAACAGAAAAACCAGAACACTGTTTGCCAGTTAATTCTACTTTTCGTGACATCACACTGCCATTACTTTTAATTAAGGAAAAAACACTTGAACACTAATCGTCTCAAAAGAGCGGCCCCTTTTTGGATATAGCTATCTTTCTTCACGCCCACAAGAAAACTTTCCAATGTGTGGTATCGAAGGTTGAGAATTTAGCGTTTCTTGTTGATGAAAATGTAAATGGGTTTTCCCGAAAGTAGGCAGCTTTCGAAG...

XM_057924385.1
TGTCAAGTTTGAGCCTTTGAAAATCTTGGCCAAGTTTCGGAGGGATGCAGAAGATGCCACCCTCGGTGTTTCTTCACCAAATGTCACCAGATTTGGGTACAACAAACCCAAGCTTGCTTTGGTAAAAATGTCTTTGCAGATTTGTGGGTTGATCCACATCAGATTTTGATGGTTACTGTTGCTTCTGCATTGCGGGAGATCGGCTACGAGATTGAGGTGTTCTCGCTGGAAGATGGCCCCGTTCGTGCTACTTGGAGAGA...

CDS

2 records

下载 CDS FASTA

LOC130998945
ATGGGTTTTCCCGAAAGTAGGCAGCTTTCGAAGAGGGATCAAAATTCTCAGCGCTCTTCTTCTGCAAGTAGCAATAACAGCAATGGTGTTAATGGCGGCTGTAATGTCTCGGGAATTTTGTGGGGTCAGAGATGCAGATCAAGATTTGCAAGATTGGTGCTTTTCAAGCGGATTGATTATGTGCAGCTGATTTGCGCGGTTGCTGTTTTCTTCTTCTTTATCTTCATCTTTCAGGTATTCTTCCTACCGGGCTCTGTGGC...

LOC130998945
ATGGTTACTGTTGCTTCTGCATTGCGGGAGATCGGCTACGAGATTGAGGTGTTCTCGCTGGAAGATGGCCCCGTTCGTGCTACTTGGAGAGAGGTAGGGCTTCCTCTCAATGTGATCAGTGCAGATGAGAACATGAAGTTCAGGGTAGATTGGCTAAACTATCATGGAATAATAGTCAATTCTCTTGGAGCTGTGGGTGTCTTATCTAGTCTTATGCAGGAACCATTCAGAAAAGTACCACTTGTATGGACCATCCATGA...

Protein

2 records

下载 Protein FASTA

XP_057780367.1
MGFPESRQLSKRDQNSQRSSSASSNNSNGVNGGCNVSGILWGQRCRSRFARLVLFKRIDYVQLICAVAVFFFFIFIFQVFFLPGSVADDGRKFGRIEGVFRRRHETSSRELSFLKELDFGEDVKFEPLKILAKFRRDAEDATLGVSSPNVTRFGYNKPKLALVFADLWVDPHQILMVTVASALREIGYEIEVFSLEDGPVRATWREVGLPLNVISADENMKFRVDWLNYHGIIVNSLGAVGVLSSLMQEPFRKVPLVWTI...

XP_057780368.1
MVTVASALREIGYEIEVFSLEDGPVRATWREVGLPLNVISADENMKFRVDWLNYHGIIVNSLGAVGVLSSLMQEPFRKVPLVWTIHEQTLAIRLRQYVSSGQTEMVDSWKKVFQRATVVVFPNYILPVAYLACDPGNYFVIPGSPEAAWQANTMMPSNTNDFAIAIVGSQLLYRGLWLEHAFILQSLYPLLANFSGASSHLKIFILAGDSASNYSRAVETIALNLKYPNETVKLVAVDENADAVLSSADLVIYGSFLDEH...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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