Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G004216

染色体: Chr08 坐标: 51544308-51547651 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G004216
名称SmilChr08G004216
描述protein ABIL1-like
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向51544308 - 51547651 / -

ID 对照

NCBI Gene IDLOC130998947
GeneID130998947
locus_tag-
NCBI NameLOC130998947
原始查询LOC130998947

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述protein ABIL1-like
产物protein ABIL1-like
ArabidopsisAT2G46225 (ABIL1)
ABI-1-like 1 [Source:NCBI gene (formerly Entrezgene);Acc:819230]
identity=55.6; qcov=0.997; evalue=4.93e-102; confidence=high
RiceOs01g0622700
-
identity=50.9; qcov=0.935; evalue=9.72e-83; confidence=high
GO-
KEGG-
PfamPF27594 (ABI)
InterPro-
eggNOG-
NRGeneID:130998947

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytoskeleton 细胞骨架 1.00000 XP_057780371.1
2 Spindle Spindle 0.80000 XP_057780371.1
3 Centrosome 中心体 0.80000 XP_057780372.1
4 Spindle pole Spindle pole 0.60000 XP_057780371.1
5 Cilium 纤毛 0.40000 XP_057780372.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:51544724 G A EMS_canonical_SNV CDS_variant 4 B130,B19,B22,C9
Chr8:51544805 C T EMS_canonical_SNV CDS_variant 1 D6
Chr8:51545065 G A EMS_canonical_SNV CDS_variant 2 B76,C22
Chr8:51545213 G A EMS_canonical_SNV CDS_variant 2 C1,C18
Chr8:51545365 G A EMS_canonical_SNV CDS_variant 1 B68
Chr8:51545568 C T EMS_canonical_SNV CDS_variant 1 C49
Chr8:51545583 C T EMS_canonical_SNV CDS_variant 4 B108,B56,B96,D4
Chr8:51545928 G A EMS_canonical_SNV CDS_variant 1 B104
Chr8:51545982 C T EMS_canonical_SNV CDS_variant 2 C1,C18
Chr8:51546347 G A EMS_canonical_SNV CDS_variant 1 C40

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057780371.1
295 aa
N
1
148
295
ABI
C
PF27594 ABI 28-93 aa
XP_057780372.1
294 aa
N
1
147
294
ABI
C
PF27594 ABI 28-93 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057780371.1 Pfam PF27594 ABI Domain 28 93 9.2e-16 58.3 Abl interactor protein
XP_057780372.1 Pfam PF27594 ABI Domain 28 93 9.1e-16 58.4 Abl interactor protein

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057924389.1
CTACAAACTTCAAACAGTGGGCCCCCTAATCTATTCCAGTTCAACTACCTTTCTACTTCTCCATACGACGACGTCGCTCTCTCTCTCTCTCTCTTGTGTTTCACTGCGAGTTGCTTCTCCCACACACACGCGCACATTTTCTTTTTCTTGTTTTGTTTTCATTTTCTCAACTCCAGATTATATTAATCCATTATACTTTGCGTCGCTCTGAATCAACTTTCATAAACTTGATTCCTCCCACAATCGCTTCATTATTGTCT...
XM_057924388.1
CCCCCTAATCTATTCCAGTTCAACTACCTTTCTACTTCTCCATACGACGACGTCGCTCTCTCTCTCTCTCTCTTGTGTTTCACTGCGAGTTGCTTCTCCCACACACACGCGCACATTTTCTTTTTCTTGTTTTGTTTTCATTTTCTCAACTCCAGATTATATTAATCCATTATACTTTGCGTCGCTCTGAATCAACTTTCATAAACTTGATTCCTCCCACAATCGCTTCATTATTGTCTTCTTTTTCATAATCATTTGGA...

CDS

2 records

下载 CDS FASTA
LOC130998947
ATGGAGGCGGGGAAAGATCGACCGGAGAAGCAAACCATGGCGTTTGATGAGATGTCGGTGGACAAGAGTATCAGTTTCGTCACGGCATTACAGGAACTGAAGAACCTCAGACCTCAACTGTATTCTGCAGCAGAGTATTGCGAAAAGTCGTATCTCAACAGTGAGCAGAAGCAGATGTTTCTGGACAATATGAAGGATTATGCTGTTAGAGCTCTAGTCAATGCAGTTGATCACCTTGGTACGGTTGCTTACAAGTTGAG...
LOC130998947
ATGGAGGCGGGGAAAGATCGACCGGAGAAGCAAACCATGGCGTTTGATGAGATGTCGGTGGACAAGAGTATCAGTTTCGTCACGGCATTACAGGAACTGAAGAACCTCAGACCTCAACTGTATTCTGCAGCAGAGTATTGCGAAAAGTCGTATCTCAACAGTGAGCAGAAGCAGATGTTTCTGGACAATATGAAGGATTATGCTGTTAGAGCTCTAGTCAATGCAGTTGATCACCTTGGTACGGTTGCTTACAAGTTGAG...

Protein

2 records

下载 Protein FASTA
XP_057780371.1
MEAGKDRPEKQTMAFDEMSVDKSISFVTALQELKNLRPQLYSAAEYCEKSYLNSEQKQMFLDNMKDYAVRALVNAVDHLGTVAYKLSDIVEQQTLEISSIDLKVACVNQKLLTCQTYTDNEGLRQQQLLAIIPKHHKHYMLPNSIKKVHFSPHVQTDPTQSILVKGRHYPSGASAARTLSWHLASATKSNMKGSSCDILSTDEAKVAGKSSPAFNSLGDGQKSKRMRSAPATRAAMQTLGVTRRDYSEGPKPLTQHRSFD...
XP_057780372.1
MEAGKDRPEKQTMAFDEMSVDKSISFVTALQELKNLRPQLYSAAEYCEKSYLNSEQKQMFLDNMKDYAVRALVNAVDHLGTVAYKLSDIVEQQTLEISSIDLKVACVNQKLLTCQTYTDNEGLRQQQLLAIIPKHHKHYMLPNSIKKVHFSPHVQTDPTQSILVKGRHYPSGASAARTLSWHLASATKSNMKGSSCDILSTDEAKVAGKSSPAFNSLDGQKSKRMRSAPATRAAMQTLGVTRRDYSEGPKPLTQHRSFDN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器