Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G004226

染色体: Chr08 坐标: 51659597-51666010 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G004226
名称SmilChr08G004226
描述golgin candidate 4-like
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向51659597 - 51666010 / +

ID 对照

NCBI Gene IDLOC130998957
GeneID130998957
locus_tag-
NCBI NameLOC130998957
原始查询LOC130998957

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
描述golgin candidate 4-like
产物golgin candidate 4-like
ArabidopsisAT2G46180 (GC4)
golgin Putative 4 [Source:NCBI gene (formerly Entrezgene);Acc:819225]
identity=53; qcov=1.02; evalue=0; confidence=high
RiceOs08g0386900
-
identity=56.8; qcov=0.481; evalue=5.68e-124; confidence=medium
GOGO:0005794 (Golgi apparatus); GO:0006888 (endoplasmic reticulum to Golgi vesicle-mediated transport); GO:0007030 (Golgi organization); GO:0031267 (small GTPase binding)
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:130998957

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Golgi apparatus 高尔基体 1.00000 XP_057780383.1
2 Trans-golgi network Trans-golgi network 0.60000 XP_057780383.1
3 Golgi stack 高尔基堆 0.20000 XP_057780383.1
4 Vesicle 囊泡 0.20000 XP_057780383.1
5 Nucleus 细胞核 0.00000 XP_057780383.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:51659851 C T EMS_canonical_SNV CDS_variant 2 B19,B22
Chr8:51659928 C T EMS_canonical_SNV CDS_variant 1 C49
Chr8:51661025 C T EMS_canonical_SNV CDS_variant 2 B19,B22
Chr8:51662687 C T EMS_canonical_SNV CDS_variant 1 C49
Chr8:51663637 C T EMS_canonical_SNV CDS_variant 3 C76,D11,D8
Chr8:51663700 C T EMS_canonical_SNV CDS_variant 1 D10
Chr8:51664215 G A EMS_canonical_SNV CDS_variant 2 B19,B22
Chr8:51664247 G A EMS_canonical_SNV CDS_variant 1 B83
Chr8:51664359 C T EMS_canonical_SNV CDS_variant 4 B101,B82,C1,C35
Chr8:51664941 C T EMS_canonical_SNV CDS_variant 3 B107,C32,C68
Chr8:51665070 C T EMS_canonical_SNV CDS_variant 5 A14,A5,B12,C27,C37
Chr8:51665071 G A EMS_canonical_SNV CDS_variant 2 B19,B22

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057924400.1
TTTTTATTTATTTTCGTTGTCTCTCTCTCAGTCAGATCTAGCGTAGCATCAAAACCCCTTAAATCAAATCAAAAATTCAATTCAATCTCGTCAAGTTTCCCCCTAAGAATTTTCTCCTCATTTTTTTTGCCAAATTCCGAATTCTAGGTGGAGCGGAAAGAGGGAAATTGAGATTTTGGCGCGTAAATCTCGATGCCGATGTGGAGCTCGGTGGCGAATTTGAAGGAAAGTCTGAGTAAAATCGCACTGGATGTCCATGA...
XM_057924401.1
TTTTTATTTATTTTCGTTGTCTCTCTCTCAGTCAGATCTAGCGTAGCATCAAAACCCCTTAAATCAAATCAAAAATTCAATTCAATCTCGTCAAGTTTCCCCCTAAGAATTTTCTCCTCATTTTTTTTGCCAAATTCCGAATTCTAGGTGGAGCGGAAAGAGGGAAATTGAGATTTTGGCGCGTAAATCTCGATGCCGATGTGGAGCTCGGTGGCGAATTTGAAGGAAAGTCTGAGTAAAATCGCACTGGATGTCCATGA...

CDS

2 records

下载 CDS FASTA
LOC130998957
ATGCCGATGTGGAGCTCGGTGGCGAATTTGAAGGAAAGTCTGAGTAAAATCGCACTGGATGTCCATGACGACGACGATGAAGAGCTATCACTGTACACTTCTCCGCCGCGCGATCAATCCGACAACGCCAGTTCAGGTTCGGAGCCGAGAGTTTCTCGCAATTCCAGTGCACCGACGCATTCGCCAATCGTCAATGGATTTGATTCCCCTTCTAATCACGAGATTGAGCTGTACAAAACAAAAATTAAGAAGCTTCAGGA...
LOC130998957
ATGCCGATGTGGAGCTCGGTGGCGAATTTGAAGGAAAGTCTGAGTAAAATCGCACTGGATGTCCATGACGACGACGATGAAGAGCTATCACTGTACACTTCTCCGCCGCGCGATCAATCCGACAACGCCAGTTCAGGTTCGGAGCCGAGAGTTTCTCGCAATTCCAGTGCACCGACGCATTCGCCAATCGTCAATGGATTTGATTCCCCTTCTAATCACGAGATTGAGCTGTACAAAACAAAAATTAAGAAGCTTCAGGA...

Protein

2 records

下载 Protein FASTA
XP_057780383.1
MPMWSSVANLKESLSKIALDVHDDDDEELSLYTSPPRDQSDNASSGSEPRVSRNSSAPTHSPIVNGFDSPSNHEIELYKTKIKKLQESESEIKALSVNYAALLKEKEDQILRLTEENGSLKQNLLSTNAAHGAPKTVLKGNGDMSPNRYSKAATKYRGAGSTLPNGIVTKHDGLSNGTTSTNSRELDAMEDKIRSFTVMQSTHESQMKQMMVELDKERGKLASIQLSLQEEQKLNGSFQQELSSLKDEKHKMLKEINRTQ...
XP_057780384.1
MPMWSSVANLKESLSKIALDVHDDDDEELSLYTSPPRDQSDNASSGSEPRVSRNSSAPTHSPIVNGFDSPSNHEIELYKTKIKKLQESESEIKALSVNYAALLKEKEDQILRLTEENGSLKQNLLSTNAAHGAPKTVLKGNGDMSPNRYSKAATKYRGAGSTLPNGIVTKHDGLSNGTTSTNSRELDAMEDKIRSFTVMQSTHESQMKQMMVELDKERGKLASIQLSLQEEQKLNGSFQQELSSLKDEKHKMLKEINRTQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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