当前解析结果
SmilChr08G004230| 统一新 Gene ID | SmilChr08G004230 |
|---|---|
| 名称 | SmilChr08G004230 |
| 描述 | uncharacterized SmilChr08G004230 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 51702378 - 51707640 / - |
| NCBI Gene ID | LOC130998960 |
|---|---|
| GeneID | 130998960 |
| locus_tag | - |
| NCBI Name | LOC130998960 |
| 原始查询 | LOC130998960 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os04g0191000; species=rice; confidence=low |
| 产物 | hit=Os04g0191000; species=rice; confidence=low |
| Arabidopsis | ATMG00860- identity=37.12; qcov=0.082; evalue=1.53e-19; confidence=weak |
| Rice | Os04g0191000- identity=31.19; qcov=0.448; evalue=1.6e-80; confidence=low |
| GO | GO:0003676 (nucleic acid binding); GO:0015074 (DNA integration) |
| KEGG | - |
| Pfam | PF00078 (RVT_1); PF00665 (rve); PF13650 (Asp_protease_2); PF17917 (RT_RNaseH); PF17919 (RT_RNaseH_2); PF17921 (Integrase_H2C2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998960 |
| Rank | 定位位置 | 中文 | 五折投票比例 | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057780386.1 |
| 2 | Nucleus | 细胞核 | 0.40000 | XP_057780386.1 |
| 3 | Cytoplasmic granule | 细胞质颗粒 | 0.40000 | XP_057780386.1 |
| 4 | Cytoplasmic ribonucleoprotein granule | Cytoplasmic ribonucleoprotein granule | 0.20000 | XP_057780386.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:51702913 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A24,A6,C14 |
Chr8:51702943 |
TG |
T |
1bp_deletion | frameshift_variant | 23 | A11,A14,A20,A24,A25,B105,B115,B121,B127,B129,B133,B138,B140,B64,B68,B95,C27,C3,C56,C59,C71,C73,C81 |
Chr8:51702948 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A18,C6,D9 |
Chr8:51702951 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C21,C83 |
Chr8:51702979 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B74,C67,C77 |
Chr8:51702987 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C6 |
Chr8:51703022 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A4,C86 |
Chr8:51703027 |
C |
CA |
1bp_insertion | frameshift_variant | 1 | B138 |
Chr8:51703027 |
C |
CA |
1bp_insertion | CDS_variant | 1 | B138 |
Chr8:51703039 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A4,C86 |
Chr8:51703092 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A4,B36 |
Chr8:51703101 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B108,B64,C16 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057780386.1PF13650
Asp_protease_2 582-674 aa
PF00078
RVT_1 932-1094 aa
PF17919
RT_RNaseH_2 1158-1256 aa
PF17917
RT_RNaseH 1186-1286 aa
PF17921
Integrase_H2C2 1386-1443 aa
PF00665
rve 1464-1557 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057780386.1 |
Pfam | PF13650 |
Asp_protease_2 | Domain | 582 | 674 | 1.2e-06 | 29.8 | Aspartyl protease |
XP_057780386.1 |
Pfam | PF00078 |
RVT_1 | Domain | 932 | 1094 | 8.4e-30 | 104.9 | Reverse transcriptase (RNA-dependent DNA polymerase) |
XP_057780386.1 |
Pfam | PF17919 |
RT_RNaseH_2 | Domain | 1158 | 1256 | 2.3e-32 | 111.7 | RNase H-like domain found in reverse transcriptase |
XP_057780386.1 |
Pfam | PF17917 |
RT_RNaseH | Domain | 1186 | 1286 | 5.7e-37 | 126.8 | RNase H-like domain found in reverse transcriptase |
XP_057780386.1 |
Pfam | PF17921 |
Integrase_H2C2 | Domain | 1386 | 1443 | 5.7e-12 | 46.3 | Integrase zinc binding domain |
XP_057780386.1 |
Pfam | PF00665 |
rve | Domain | 1464 | 1557 | 9.9e-17 | 61.8 | Integrase core domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。