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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G004277

染色体: Chr08 坐标: 52329578-52332998 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G004277
名称SmilChr08G004277
描述pentatricopeptide repeat-containing protein At1g80150, mitochondrial-like
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向52329578 - 52332998 / -

ID 对照

NCBI Gene IDLOC130999004
GeneID130999004
locus_tag-
NCBI NameLOC130999004
原始查询LOC130999004

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At1g80150, mitochondrial-like
产物pentatricopeptide repeat-containing protein At1g80150%2C mitochondrial-like
ArabidopsisAT1G80150 (AT1G80150)
Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:844355]
identity=58.6; qcov=0.913; evalue=7.75e-162; confidence=high
RiceOs08g0499800
-
identity=48.9; qcov=0.918; evalue=2.68e-133; confidence=high
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:130999004

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 1.00000 XP_057780449.1
2 Nucleus 细胞核 0.00000 XP_057780449.1
3 Chromosome 染色体 0.00000 XP_057780449.1
4 Centromere 着丝粒 0.00000 XP_057780449.1
5 Chromatin 染色质 0.00000 XP_057780449.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:52331058 TA T 1bp_deletion frameshift_variant 1 C51
Chr8:52331058 TA T 1bp_deletion CDS_variant 1 C51
Chr8:52331303 T TG 1bp_insertion frameshift_variant 1 B113
Chr8:52331303 T TG 1bp_insertion CDS_variant 1 B113
Chr8:52331393 C T EMS_canonical_SNV CDS_variant 2 A16,C67
Chr8:52331418 A AT 1bp_insertion frameshift_variant 1 C82
Chr8:52331418 A AT 1bp_insertion CDS_variant 1 C82
Chr8:52331480 G A EMS_canonical_SNV CDS_variant 1 B122

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780449.1
426 aa
N
1
213
426
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR
TPR_24
PPR_1
PPR_2
PPR_3
PPR
C
PF01535 PPR 135-160 aa PF13812 PPR_3 193-244 aa PF12854 PPR_1 195-223 aa PF13041 PPR_2 199-244 aa PF01535 PPR 201-230 aa PF13812 PPR_3 226-281 aa PF01535 PPR 236-266 aa PF23276 TPR_24 296-396 aa PF12854 PPR_1 305-330 aa PF13041 PPR_2 306-354 aa PF13812 PPR_3 307-352 aa PF01535 PPR 309-338 aa
XP_057780450.1
426 aa
N
1
213
426
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR
TPR_24
PPR_1
PPR_2
PPR_3
PPR
C
PF01535 PPR 135-160 aa PF13812 PPR_3 193-244 aa PF12854 PPR_1 195-223 aa PF13041 PPR_2 199-244 aa PF01535 PPR 201-230 aa PF13812 PPR_3 226-281 aa PF01535 PPR 236-266 aa PF23276 TPR_24 296-396 aa PF12854 PPR_1 305-330 aa PF13041 PPR_2 306-354 aa PF13812 PPR_3 307-352 aa PF01535 PPR 309-338 aa
XP_057780451.1
426 aa
N
1
213
426
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR
TPR_24
PPR_1
PPR_2
PPR_3
PPR
C
PF01535 PPR 135-160 aa PF13812 PPR_3 193-244 aa PF12854 PPR_1 195-223 aa PF13041 PPR_2 199-244 aa PF01535 PPR 201-230 aa PF13812 PPR_3 226-281 aa PF01535 PPR 236-266 aa PF23276 TPR_24 296-396 aa PF12854 PPR_1 305-330 aa PF13041 PPR_2 306-354 aa PF13812 PPR_3 307-352 aa PF01535 PPR 309-338 aa
XP_057780452.1
426 aa
N
1
213
426
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR
TPR_24
PPR_1
PPR_2
PPR_3
PPR
C
PF01535 PPR 135-160 aa PF13812 PPR_3 193-244 aa PF12854 PPR_1 195-223 aa PF13041 PPR_2 199-244 aa PF01535 PPR 201-230 aa PF13812 PPR_3 226-281 aa PF01535 PPR 236-266 aa PF23276 TPR_24 296-396 aa PF12854 PPR_1 305-330 aa PF13041 PPR_2 306-354 aa PF13812 PPR_3 307-352 aa PF01535 PPR 309-338 aa
XP_057780453.1
426 aa
N
1
213
426
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR
TPR_24
PPR_1
PPR_2
PPR_3
PPR
C
PF01535 PPR 135-160 aa PF13812 PPR_3 193-244 aa PF12854 PPR_1 195-223 aa PF13041 PPR_2 199-244 aa PF01535 PPR 201-230 aa PF13812 PPR_3 226-281 aa PF01535 PPR 236-266 aa PF23276 TPR_24 296-396 aa PF12854 PPR_1 305-330 aa PF13041 PPR_2 306-354 aa PF13812 PPR_3 307-352 aa PF01535 PPR 309-338 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057780449.1 Pfam PF01535 PPR Repeat 135 160 6.4e-22 76.9 PPR repeat
XP_057780449.1 Pfam PF13812 PPR_3 Repeat 193 244 2.3e-16 60.4 Pentatricopeptide repeat domain
XP_057780449.1 Pfam PF12854 PPR_1 Repeat 195 223 1.3e-31 108.7 PPR repeat
XP_057780449.1 Pfam PF13041 PPR_2 Repeat 199 244 9.7e-38 128.8 PPR repeat family
XP_057780449.1 Pfam PF01535 PPR Repeat 201 230 6.4e-22 76.9 PPR repeat
XP_057780449.1 Pfam PF13812 PPR_3 Repeat 226 281 2.3e-16 60.4 Pentatricopeptide repeat domain
XP_057780449.1 Pfam PF01535 PPR Repeat 236 266 6.4e-22 76.9 PPR repeat
XP_057780449.1 Pfam PF23276 TPR_24 Repeat 296 396 1.5e-09 38.6 Pentatricopeptide repeat-containing protein
XP_057780449.1 Pfam PF12854 PPR_1 Repeat 305 330 1.3e-31 108.7 PPR repeat
XP_057780449.1 Pfam PF13041 PPR_2 Repeat 306 354 9.7e-38 128.8 PPR repeat family
XP_057780449.1 Pfam PF13812 PPR_3 Repeat 307 352 2.3e-16 60.4 Pentatricopeptide repeat domain
XP_057780449.1 Pfam PF01535 PPR Repeat 309 338 6.4e-22 76.9 PPR repeat
XP_057780450.1 Pfam PF01535 PPR Repeat 135 160 6.4e-22 76.9 PPR repeat
XP_057780450.1 Pfam PF13812 PPR_3 Repeat 193 244 2.3e-16 60.4 Pentatricopeptide repeat domain
XP_057780450.1 Pfam PF12854 PPR_1 Repeat 195 223 1.3e-31 108.7 PPR repeat
XP_057780450.1 Pfam PF13041 PPR_2 Repeat 199 244 9.7e-38 128.8 PPR repeat family
XP_057780450.1 Pfam PF01535 PPR Repeat 201 230 6.4e-22 76.9 PPR repeat
XP_057780450.1 Pfam PF13812 PPR_3 Repeat 226 281 2.3e-16 60.4 Pentatricopeptide repeat domain
XP_057780450.1 Pfam PF01535 PPR Repeat 236 266 6.4e-22 76.9 PPR repeat
XP_057780450.1 Pfam PF23276 TPR_24 Repeat 296 396 1.5e-09 38.6 Pentatricopeptide repeat-containing protein
XP_057780450.1 Pfam PF12854 PPR_1 Repeat 305 330 1.3e-31 108.7 PPR repeat
XP_057780450.1 Pfam PF13041 PPR_2 Repeat 306 354 9.7e-38 128.8 PPR repeat family
XP_057780450.1 Pfam PF13812 PPR_3 Repeat 307 352 2.3e-16 60.4 Pentatricopeptide repeat domain
XP_057780450.1 Pfam PF01535 PPR Repeat 309 338 6.4e-22 76.9 PPR repeat
XP_057780451.1 Pfam PF01535 PPR Repeat 135 160 6.4e-22 76.9 PPR repeat
XP_057780451.1 Pfam PF13812 PPR_3 Repeat 193 244 2.3e-16 60.4 Pentatricopeptide repeat domain
XP_057780451.1 Pfam PF12854 PPR_1 Repeat 195 223 1.3e-31 108.7 PPR repeat
XP_057780451.1 Pfam PF13041 PPR_2 Repeat 199 244 9.7e-38 128.8 PPR repeat family
XP_057780451.1 Pfam PF01535 PPR Repeat 201 230 6.4e-22 76.9 PPR repeat
XP_057780451.1 Pfam PF13812 PPR_3 Repeat 226 281 2.3e-16 60.4 Pentatricopeptide repeat domain
XP_057780451.1 Pfam PF01535 PPR Repeat 236 266 6.4e-22 76.9 PPR repeat
XP_057780451.1 Pfam PF23276 TPR_24 Repeat 296 396 1.5e-09 38.6 Pentatricopeptide repeat-containing protein
XP_057780451.1 Pfam PF12854 PPR_1 Repeat 305 330 1.3e-31 108.7 PPR repeat
XP_057780451.1 Pfam PF13041 PPR_2 Repeat 306 354 9.7e-38 128.8 PPR repeat family
XP_057780451.1 Pfam PF13812 PPR_3 Repeat 307 352 2.3e-16 60.4 Pentatricopeptide repeat domain
XP_057780451.1 Pfam PF01535 PPR Repeat 309 338 6.4e-22 76.9 PPR repeat
XP_057780452.1 Pfam PF01535 PPR Repeat 135 160 6.4e-22 76.9 PPR repeat
XP_057780452.1 Pfam PF13812 PPR_3 Repeat 193 244 2.3e-16 60.4 Pentatricopeptide repeat domain
XP_057780452.1 Pfam PF12854 PPR_1 Repeat 195 223 1.3e-31 108.7 PPR repeat
XP_057780452.1 Pfam PF13041 PPR_2 Repeat 199 244 9.7e-38 128.8 PPR repeat family
XP_057780452.1 Pfam PF01535 PPR Repeat 201 230 6.4e-22 76.9 PPR repeat
XP_057780452.1 Pfam PF13812 PPR_3 Repeat 226 281 2.3e-16 60.4 Pentatricopeptide repeat domain
XP_057780452.1 Pfam PF01535 PPR Repeat 236 266 6.4e-22 76.9 PPR repeat
XP_057780452.1 Pfam PF23276 TPR_24 Repeat 296 396 1.5e-09 38.6 Pentatricopeptide repeat-containing protein
XP_057780452.1 Pfam PF12854 PPR_1 Repeat 305 330 1.3e-31 108.7 PPR repeat
XP_057780452.1 Pfam PF13041 PPR_2 Repeat 306 354 9.7e-38 128.8 PPR repeat family
XP_057780452.1 Pfam PF13812 PPR_3 Repeat 307 352 2.3e-16 60.4 Pentatricopeptide repeat domain
XP_057780452.1 Pfam PF01535 PPR Repeat 309 338 6.4e-22 76.9 PPR repeat
XP_057780453.1 Pfam PF01535 PPR Repeat 135 160 6.4e-22 76.9 PPR repeat
XP_057780453.1 Pfam PF13812 PPR_3 Repeat 193 244 2.3e-16 60.4 Pentatricopeptide repeat domain
XP_057780453.1 Pfam PF12854 PPR_1 Repeat 195 223 1.3e-31 108.7 PPR repeat
XP_057780453.1 Pfam PF13041 PPR_2 Repeat 199 244 9.7e-38 128.8 PPR repeat family
XP_057780453.1 Pfam PF01535 PPR Repeat 201 230 6.4e-22 76.9 PPR repeat
XP_057780453.1 Pfam PF13812 PPR_3 Repeat 226 281 2.3e-16 60.4 Pentatricopeptide repeat domain
XP_057780453.1 Pfam PF01535 PPR Repeat 236 266 6.4e-22 76.9 PPR repeat
XP_057780453.1 Pfam PF23276 TPR_24 Repeat 296 396 1.5e-09 38.6 Pentatricopeptide repeat-containing protein
XP_057780453.1 Pfam PF12854 PPR_1 Repeat 305 330 1.3e-31 108.7 PPR repeat
XP_057780453.1 Pfam PF13041 PPR_2 Repeat 306 354 9.7e-38 128.8 PPR repeat family
XP_057780453.1 Pfam PF13812 PPR_3 Repeat 307 352 2.3e-16 60.4 Pentatricopeptide repeat domain
XP_057780453.1 Pfam PF01535 PPR Repeat 309 338 6.4e-22 76.9 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA
XM_057924470.1
ATATGTTAAAAAGTAAAACCTAAAACCTAATTCCCTAAACTAAATCAGCGCCGCACAGCCACAGCTCCACCACCGCGCCTTGTCTGACTCCCATCCCTCTCCAGTCTCCACCGCGCGGTCCGCGCCGTCCCATCCCGCCGGCCGCCGGCCGCCACCCCACCTACTCTGCGCCTGCAATCGCCCACCACGCCACCTCCGCGCTTGCAATCCCCCAGAGCAGCTCGAAGCTCGAGCGCAGAGCGCCGCAGATCTGCGCCTCT...
XM_057924469.1
ATATGTTAAAAAGTAAAACCTAAAACCTAATTCCCTAAACTAAATCAGCGCCGCACAGCCACAGCTCCACCACCGCGCCTTGTCTGACTCCCATCCCTCTCCAGTCTCCACCGCGCGGTCCGCGCCGTCCCATCCCGCCGGCCGCCGGCCGCCACCCCACCTACTCTGCGCCTGCAATCGCCCACCACGCCACCTCCGCGCTTGCAATCCCCCAGAGCAGCTCGAAGCTCGAGCGCAGAGCGCCGCAGATCTGCGCCTCT...

CDS

5 records

下载 CDS FASTA
LOC130999004
ATGGTTCGGATTGGATTTTATTTTCTTCAAACTTCGGATTTTCGGATCGGATCGGATCAAGCAAAAATCCGATCCGTAATCCGAATGCTCACCCACCGTAATCTGGCCACCGCAGCTGTTTCTTCATCCGTTAATAAAGTTATCTCCGCCAGCAGTAGTGCTGGAAAACCTAGTTCAGTAGATGAGCCTGCATTGGTTAAGCTAAAGAATGAAAGGGACCCTGAGAAACTGTTCAATTTATTTAAGGCCAATGCCACAAA...
LOC130999004
ATGGTTCGGATTGGATTTTATTTTCTTCAAACTTCGGATTTTCGGATCGGATCGGATCAAGCAAAAATCCGATCCGTAATCCGAATGCTCACCCACCGTAATCTGGCCACCGCAGCTGTTTCTTCATCCGTTAATAAAGTTATCTCCGCCAGCAGTAGTGCTGGAAAACCTAGTTCAGTAGATGAGCCTGCATTGGTTAAGCTAAAGAATGAAAGGGACCCTGAGAAACTGTTCAATTTATTTAAGGCCAATGCCACAAA...

Protein

5 records

下载 Protein FASTA
XP_057780449.1
MVRIGFYFLQTSDFRIGSDQAKIRSVIRMLTHRNLATAAVSSSVNKVISASSSAGKPSSVDEPALVKLKNERDPEKLFNLFKANATNKLVVENRFVFEDTVSRLAGAGQLDYIENLLEHQKTLPQGRREGFIIRIIMLYGRARMTKHAVNTFCDMHLYGCVRTVKSFNAALKVLTESRDLQAINWFLNDVPARFGIVLDAYSFNIVIKGLCEMGILDKAFLVMAGMGKWGLAPDVFTYTLLIEASYKSNWPEIANGLWSR...
XP_057780450.1
MVRIGFYFLQTSDFRIGSDQAKIRSVIRMLTHRNLATAAVSSSVNKVISASSSAGKPSSVDEPALVKLKNERDPEKLFNLFKANATNKLVVENRFVFEDTVSRLAGAGQLDYIENLLEHQKTLPQGRREGFIIRIIMLYGRARMTKHAVNTFCDMHLYGCVRTVKSFNAALKVLTESRDLQAINWFLNDVPARFGIVLDAYSFNIVIKGLCEMGILDKAFLVMAGMGKWGLAPDVFTYTLLIEASYKSNWPEIANGLWSR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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