Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004050`

染色体: Chr01 坐标: 58955005-58956208 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004050`
名称	SmilChr01G004050
描述	probable glutathione peroxidase 5
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	58955005 - 58956208 / `-`

ID 对照

NCBI Gene ID	`LOC130999055`
GeneID	`130999055`
locus_tag	`-`
NCBI Name	`LOC130999055`
原始查询	`LOC130999055`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable glutathione peroxidase 5
产物	probable glutathione peroxidase 5
Arabidopsis	`AT2G48150` (GPX4) glutathione peroxidase 4 [Source:NCBI gene (formerly Entrezgene);Acc:819427] identity=64.5; qcov=0.977; evalue=1.09e-81; confidence=high
Rice	`Os03g0358100` (OsGpx2) - identity=64.5; qcov=0.977; evalue=1.39e-81; confidence=high
GO	GO:0004602 (glutathione peroxidase activity); GO:0006979 (response to oxidative stress)
KEGG	smil00480 (Glutathione metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF00255 (GSHPx); PF00578 (AhpC-TSA); PF08534 (Redoxin)
InterPro	-
eggNOG	-
NR	GeneID:130999055

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057780502.1`
2	Cytoplasm	细胞质	0.60000	`XP_057780502.1`
3	Nucleus	细胞核	0.00000	`XP_057780502.1`
4	Chromosome	染色体	0.00000	`XP_057780502.1`
5	Centromere	着丝粒	0.00000	`XP_057780502.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:58955205`	`G`	`A`	EMS_canonical_SNV	stop_gained	26	A2,A20,A5,A6,B10,B105,B110,B114,B122,B130,B19,B2,B21,B28,B30,B36,B60,B74,B87,B98,C19,C48,C53,C80,C83,D3
`Chr1:58955208`	`AGT`	`A`	2bp_deletion	frameshift_variant	1	A11
`Chr1:58955208`	`AGT`	`A`	2bp_deletion	CDS_variant	1	A11
`Chr1:58955246`	`G`	`GAT`	2bp_insertion	frameshift_variant	129	A1,A10,A11,A13,A14,A15,A18,A2,A20,A23,A24,A25,A3,A4,A5,A7,A8,A9,B1,B102,B103,B105,B106,B110,B111,B112,B113,B117,B118,B12,B120,B124,B126,B129,B132,B133,B134,B138,B139,B140,B15,B18,B19,B2,B23,B25,B26,B31,B33,B35,B36,B37,B40,B41,B44,B47,B49,B5,B50,B52,B55,B56,B60,B61,B62,B63,B65,B68,B71,B72,B73,B74,B76,B79,B8,B80,B82,B86,B9,B91,B93,B94,C10,C12,C13,C16,C18,C19,C20,C22,C23,C25,C26,C27,C28,C29,C3,C38,C39,C42,C44,C46,C47,C49,C5,C53,C55,C58,C59,C6,C61,C62,C64,C65,C66,C7,C71,C77,C78,C79,C82,C84,D1,D11,D2,D3,D4,D6,D9
`Chr1:58955265`	`C`	`CCG`	2bp_insertion	frameshift_variant	77	A1,A10,A14,A15,A2,A20,A23,A24,A25,A3,A4,A5,A9,B102,B103,B105,B112,B117,B118,B12,B120,B124,B126,B133,B134,B137,B139,B18,B19,B2,B23,B31,B33,B35,B40,B41,B44,B47,B49,B5,B50,B55,B56,B60,B61,B65,B71,B74,B76,B8,B9,B94,C16,C19,C22,C23,C25,C26,C28,C29,C3,C39,C4,C46,C47,C53,C55,C65,C7,C71,C77,C78,D1,D2,D3,D6,D9
`Chr1:58955267`	`GCT`	`G`	2bp_deletion	frameshift_variant	77	A1,A10,A14,A15,A2,A20,A23,A24,A25,A3,A4,A5,A9,B102,B103,B105,B112,B117,B118,B12,B120,B124,B126,B133,B134,B137,B139,B18,B19,B2,B23,B31,B33,B35,B40,B41,B44,B47,B49,B5,B50,B55,B56,B60,B61,B65,B71,B74,B76,B8,B9,B94,C16,C19,C22,C23,C25,C26,C28,C29,C3,C39,C4,C46,C47,C53,C55,C65,C7,C71,C77,C78,D1,D2,D3,D6,D9
`Chr1:58955300`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B136,B95,C73,C81
`Chr1:58955319`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A19,B118,B137,C19
`Chr1:58955360`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B105,B75
`Chr1:58955389`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A16
`Chr1:58955391`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B136,B95,C73,C81
`Chr1:58955397`	`T`	`TA`	1bp_insertion	frameshift_variant	4	B112,B137,B74,C5

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780502.1

189 aa

189

AhpC-TSA

GSHPx

Redoxin

PF00578 AhpC-TSA 13-78 aa PF00255 GSHPx 13-121 aa PF08534 Redoxin 13-152 aa

XP_057780511.1

173 aa

173

AhpC-TSA

GSHPx

Redoxin

PF00578 AhpC-TSA 13-75 aa PF00255 GSHPx 13-121 aa PF08534 Redoxin 13-152 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057780502.1`	Pfam	`PF00578`	AhpC-TSA	Domain	13	78	8.1e-10	39.4	AhpC/TSA family
`XP_057780502.1`	Pfam	`PF00255`	GSHPx	Family	13	121	4.1e-40	136.5	Glutathione peroxidase
`XP_057780502.1`	Pfam	`PF08534`	Redoxin	Domain	13	152	1.7e-09	38.3	Redoxin
`XP_057780511.1`	Pfam	`PF00578`	AhpC-TSA	Domain	13	75	8.3e-10	39.4	AhpC/TSA family
`XP_057780511.1`	Pfam	`PF00255`	GSHPx	Family	13	121	3.2e-40	136.8	Glutathione peroxidase
`XP_057780511.1`	Pfam	`PF08534`	Redoxin	Domain	13	152	1.6e-09	38.4	Redoxin

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057924528.1
GCAAAAATGATAGGACATGCAAAGTGGAAATTGATTATTTAAATTAATTTTCGGCTCTTGCCAACAATAATGTCATTTGTATGAGAAACAAGAAAGAAATAAGCAATCAATGGGGAATTCTTCTTCATCAATCACAGAGGGATCCATCCACGATTTCGTCGTCAAGGACACCAAAGATCAAGATGTGAGCCTCGATATATTTAAGGGGAAGGTGTTGCTTGTTGTCAATGTCGCCTCGCAATGTGGCTACACAAACTCGA...

XM_057924519.1
GCAAAAATGATAGGACATGCAAAGTGGAAATTGATTATTTAAATTAATTTTCGGCTCTTGCCAACAATAATGTCATTTGTATGAGAAACAAGAAAGAAATAAGCAATCAATGGGGAATTCTTCTTCATCAATCACAGAGGGATCCATCCACGATTTCGTCGTCAAGGACACCAAAGATCAAGATGTGAGCCTCGATATATTTAAGGGGAAGGTGTTGCTTGTTGTCAATGTCGCCTCGCAATGTGGCTACACAAACTCGA...

CDS

2 records

下载 CDS FASTA

LOC130999055
ATGGGGAATTCTTCTTCATCAATCACAGAGGGATCCATCCACGATTTCGTCGTCAAGGACACCAAAGATCAAGATGTGAGCCTCGATATATTTAAGGGGAAGGTGTTGCTTGTTGTCAATGTCGCCTCGCAATGTGGCTACACAAACTCGAATTACACAGAGTTATCTGAGCTCTATGCTCAATTCAAGGACAAGGGTTTCGAGATATTAGCATTTCCATGCAACCAGTTCTTGAAGCAGGAACCTGGATCAAGCCAAGA...

Protein

2 records

下载 Protein FASTA

XP_057780502.1
MGNSSSSITEGSIHDFVVKDTKDQDVSLDIFKGKVLLVVNVASQCGYTNSNYTELSELYAQFKDKGFEILAFPCNQFLKQEPGSSQEAEQFACTRFNAEFPIFHKVKVNGPNAAPVYKFLKSNKKGHCGSSIKWNFTKFLVDRDGHVIKRYGTSTSPLAIAVSFSHTPLISHTHLFIYSHCQFMCCIAG

XP_057780511.1
MGNSSSSITEGSIHDFVVKDTKDQDVSLDIFKGKVLLVVNVASQCGYTNSNYTELSELYAQFKDKGFEILAFPCNQFLKQEPGSSQEAEQFACTRFNAEFPIFHKVKVNGPNAAPVYKFLKSNKKGHCGSSIKWNFTKFLVDRDGHVIKRYGTSTSPLAIAGDIKKALELEET

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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