Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G004336`

染色体: Chr08 坐标: 53017363-53023826 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G004336`
名称	SmilChr08G004336
描述	zinc finger CCCH domain-containing protein 56-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	53017363 - 53023826 / `-`

ID 对照

NCBI Gene ID	`LOC130999063`
GeneID	`130999063`
locus_tag	`-`
NCBI Name	`LOC130999063`
原始查询	`LOC130999063`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	zinc finger CCCH domain-containing protein 56-like
产物	zinc finger CCCH domain-containing protein 56-like
Arabidopsis	`AT1G32360` (AT1G32360) Zinc finger (CCCH-type) family protein [Source:NCBI gene (formerly Entrezgene);Acc:840128] identity=36.6; qcov=1.01; evalue=4.22e-53; confidence=medium
Rice	`Os08g0159800` (OsC3H56) - identity=36.1; qcov=0.978; evalue=2.21e-56; confidence=medium
GO	GO:0003729 (mRNA binding); GO:0046872 (metal ion binding)
KEGG	-
Pfam	PF00642 (zf-CCCH)
InterPro	-
eggNOG	-
NR	GeneID:130999063

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057780512.1`
2	Chromosome	染色体	0.00000	`XP_057780512.1`
3	Centromere	着丝粒	0.00000	`XP_057780512.1`
4	Chromatin	染色质	0.00000	`XP_057780512.1`
5	Telomere	端粒	0.00000	`XP_057780512.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:53017626`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B123
`Chr8:53017667`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B122
`Chr8:53017668`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B76,B83,C46,C86
`Chr8:53017790`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B40,B5,C33,C61
`Chr8:53021051`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A19,A8,B35,D2
`Chr8:53021449`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C41
`Chr8:53021660`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D3
`Chr8:53021673`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A19,A8,B35,B53,C8
`Chr8:53021706`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B123

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780512.1

323 aa

162

323

zf-CCCH

PF00642 zf-CCCH 213-238 aa

XP_057780513.1

323 aa

162

323

zf-CCCH

PF00642 zf-CCCH 213-238 aa

XP_057780514.1

323 aa

162

323

zf-CCCH

PF00642 zf-CCCH 213-238 aa

XP_057780515.1

323 aa

162

323

zf-CCCH

PF00642 zf-CCCH 213-238 aa

XP_057780516.1

323 aa

162

323

zf-CCCH

PF00642 zf-CCCH 213-238 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057780512.1`	Pfam	`PF00642`	zf-CCCH	Family	213	238	1.5e-11	44.6	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
`XP_057780513.1`	Pfam	`PF00642`	zf-CCCH	Family	213	238	1.5e-11	44.6	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
`XP_057780514.1`	Pfam	`PF00642`	zf-CCCH	Family	213	238	1.5e-11	44.6	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
`XP_057780515.1`	Pfam	`PF00642`	zf-CCCH	Family	213	238	1.5e-11	44.6	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
`XP_057780516.1`	Pfam	`PF00642`	zf-CCCH	Family	213	238	1.5e-11	44.6	Zinc finger C-x8-C-x5-C-x3-H type (and similar)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XM_057924533.1
GAAAATATGAAAAAATATGTGAGTGATAAAAAGAGAGGTATAAACATTGCTGTGGGCCGGCGGTGGTGGTGGAGCTGCCACCGCCGCCGCCGATGAGAGTTCCAGGCACTACGCGTCGTTCGGTCGCAGTTTTCAACCGCCGGCGCGGCTGCGCCGAGGCTCTTAGAGACGATGAATAGAGGATTTTGCGATGGAAAAAGAACCTTCATTCACCAAGGTGGAGATGCAAGTATGGAAACTCGTTCCAAAATGCCAAAATG...

XM_057924532.1
ATATGAAAAAATATGTGAGTGATAAAAAGAGAGGTATAAACATTGCTGTGGGCCGGCGGTGGTGGTGGAGCTGCCACCGCCGCCGCCGATGAGAGTTCCAGGCACTACGCGTCGTTCGGTCGCAGTTTTCAACCGCCGGCGCGGCTGCGCCGAGGCTCTTAGTTCCAGTGTTATTTCATGAGTTGGTAGCAGTGACACTCTGGGTTGATGGTGCCTGATTAAGCTTAAGAGGATTTCTCTTGATTTTGTGTGGATATGGA...

CDS

5 records

下载 CDS FASTA

LOC130999063
ATGGAATGTAATCGGGGGACTGGATCCCATGTGGCAAATGTAGTAGGTTTCCAATCTGGAAACCCAGGGAACAGTGCCAAGGATGGTATGTGTGAAAGAGAAACATCTGTTCACACTAATTTAACATCAAATTGTAATGAACGATCATTCCAATTTGAAGTGGAAAGTGAGCCACCAAATAAAAGAGCAAAGAATGACCTCTTGGAGGATTCGACTACCTTTGATCGCAAGAAGACCATTGGAAAGGTGCTTTACAAGAC...

Protein

5 records

下载 Protein FASTA

XP_057780512.1
MECNRGTGSHVANVVGFQSGNPGNSAKDGMCERETSVHTNLTSNCNERSFQFEVESEPPNKRAKNDLLEDSTTFDRKKTIGKVLYKTRLCFQFRAGSCPFDENCDFAHSMEELRELPHNWQEILATHKEELMELSEQSRDVFQIPAEETHRPSLRQYCKGFLSRVGCQYGENCLLIHNEHYMERKSAAICLIPGPGSGFGSNGSKLTSNASHWKSRLCNKWESTGICEYGRNCVFAHGFAELQHYGGWRVKEEDIGSSAF...

XP_057780513.1
MECNRGTGSHVANVVGFQSGNPGNSAKDGMCERETSVHTNLTSNCNERSFQFEVESEPPNKRAKNDLLEDSTTFDRKKTIGKVLYKTRLCFQFRAGSCPFDENCDFAHSMEELRELPHNWQEILATHKEELMELSEQSRDVFQIPAEETHRPSLRQYCKGFLSRVGCQYGENCLLIHNEHYMERKSAAICLIPGPGSGFGSNGSKLTSNASHWKSRLCNKWESTGICEYGRNCVFAHGFAELQHYGGWRVKEEDIGSSAF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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