当前解析结果
SmilChr01G001080| 统一新 Gene ID | SmilChr01G001080 |
|---|---|
| 名称 | SmilChr01G001080 |
| 描述 | uncharacterized SmilChr01G001080 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 22234121 - 22234822 / + |
| NCBI Gene ID | LOC130999069 |
|---|---|
| GeneID | 130999069 |
| locus_tag | - |
| NCBI Name | LOC130999069 |
| 原始查询 | LOC130999069 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os08g0225900; species=rice; confidence=low |
| 产物 | hit=Os08g0225900; species=rice; confidence=low |
| Arabidopsis | AT5G41220 (GSTT3)glutathione S-transferase THETA 3 [Source:NCBI gene (formerly Entrezgene);Acc:834124] identity=28.2; qcov=0.927; evalue=6.89e-10; confidence=low |
| Rice | Os08g0225900- identity=30.7; qcov=0.807; evalue=1.41e-13; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999069 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057780560.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057780560.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057780560.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057780560.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057780560.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:22234161 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C26 |
Chr1:22234171 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C11 |
Chr1:22234191 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B48,C82,D5 |
Chr1:22234192 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C11 |
Chr1:22234213 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A2,C11 |
Chr1:22234234 |
ATG |
A |
2bp_deletion | frameshift_variant | 1 | B88 |
Chr1:22234234 |
ATG |
A |
2bp_deletion | CDS_variant | 1 | B88 |
Chr1:22234260 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr1:22234276 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D7 |
Chr1:22234354 |
GT |
G |
1bp_deletion | frameshift_variant | 17 | B129,B130,B134,B29,B3,B36,B38,B59,C10,C27,C43,C48,C64,C87,C9,D11,D8 |
Chr1:22234394 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | B88 |
Chr1:22234394 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B88 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。