当前解析结果
SmilChr08G004351| 统一新 Gene ID | SmilChr08G004351 |
|---|---|
| 名称 | SmilChr08G004351 |
| 描述 | U-box domain-containing protein 33 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 53211474 - 53217254 / + |
| NCBI Gene ID | LOC130999078 |
|---|---|
| GeneID | 130999078 |
| locus_tag | - |
| NCBI Name | LOC130999078 |
| 原始查询 | LOC130999078 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | U-box domain-containing protein 33 |
| 产物 | U-box domain-containing protein 33 |
| Arabidopsis | AT2G45910 (AT2G45910)U-box domain-containing protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:819199] identity=53.8; qcov=0.95; evalue=0; confidence=high |
| Rice | Os10g0548700 (RLCK306)- identity=42.8; qcov=0.989; evalue=0; confidence=medium |
| GO | GO:0004672 (protein kinase activity); GO:0004842 (ubiquitin-protein transferase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0016567 (protein ubiquitination) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF04564 (U-box); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999078 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057780538.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057780538.1 |
| 3 | Cytoplasm | 细胞质 | 0.20000 | XP_057780538.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057780538.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057780538.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:53212946 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B19,B26,B36,B52,B61 |
Chr8:53214291 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B33,B49,C32,C68 |
Chr8:53214315 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B118,C56 |
Chr8:53214750 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A10,C44 |
Chr8:53214752 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B83,C46,C86,D10 |
Chr8:53214830 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C14 |
Chr8:53215276 |
A |
AAG |
2bp_insertion | frameshift_variant | 1 | B55 |
Chr8:53215276 |
A |
AAG |
2bp_insertion | CDS_variant | 1 | B55 |
Chr8:53215291 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr8:53215541 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B99,C87 |
Chr8:53215918 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B84 |
Chr8:53216034 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B26,C77 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057780538.1PF00069
Pkinase 529-782 aa
PF07714
PK_Tyr_Ser-Thr 531-784 aa
PF04564
U-box 813-882 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057780538.1 |
Pfam | PF00069 |
Pkinase | Domain | 529 | 782 | 5.6e-40 | 138.1 | Protein kinase domain |
XP_057780538.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 531 | 784 | 6.9e-41 | 141.0 | Protein tyrosine and serine/threonine kinase |
XP_057780538.1 |
Pfam | PF04564 |
U-box | Domain | 813 | 882 | 1.7e-21 | 76.9 | U-box domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。