当前解析结果
SmilChr08G004366| 统一新 Gene ID | SmilChr08G004366 |
|---|---|
| 名称 | SmilChr08G004366 |
| 描述 | bifunctional L-3-cyanoalanine synthase/cysteine synthase 1, mitochondrial |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 53395647 - 53401688 / + |
| NCBI Gene ID | LOC130999095 |
|---|---|
| GeneID | 130999095 |
| locus_tag | - |
| NCBI Name | LOC130999095 |
| 原始查询 | LOC130999095 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | bifunctional L-3-cyanoalanine synthase/cysteine synthase 1, mitochondrial |
| 产物 | bifunctional L-3-cyanoalanine synthase/cysteine synthase 1%2C mitochondrial |
| Arabidopsis | AT3G61440 (CYSC1)cysteine synthase C1 [Source:NCBI gene (formerly Entrezgene);Acc:825317] identity=78.5; qcov=1.01; evalue=0; confidence=high |
| Rice | Os04g0165700 (OsCAS)- identity=77.1; qcov=0.886; evalue=0; confidence=high |
| GO | GO:0004124 (cysteine synthase activity); GO:0005737 (cytoplasm); GO:0006535 (GO:0006535) |
| KEGG | smil00270 (Cysteine and methionine metabolism - Salvia miltiorrhiza (redroot sage)); smil00460 (Cyanoamino acid metabolism - Salvia miltiorrhiza (redroot sage)); smil00920 (Sulfur metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01200 (Carbon metabolism - Salvia miltiorrhiza (redroot sage)); smil01230 (Biosynthesis of amino acids - Salvia miltiorrhiza (redroot sage)); smil01320 (Sulfur cycle - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00291 (PALP) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999095 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057780562.1 |
| 2 | Mitochondrion matrix | 线粒体基质 | 1.00000 | XP_057780562.1 |
| 3 | Mitochondrion membrane | 线粒体膜 | 0.20000 | XP_057780562.1 |
| 4 | Mitochondrion inner membrane | 线粒体内膜 | 0.20000 | XP_057780562.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057780562.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:53396013 |
GA |
G |
1bp_deletion | frameshift_variant | 1 | C15 |
Chr8:53396013 |
GA |
G |
1bp_deletion | CDS_variant | 1 | C15 |
Chr8:53396053 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A8,B59,B89,C65 |
Chr8:53396072 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B102,B120,C75 |
Chr8:53396114 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B60,D3 |
Chr8:53399076 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B30,B35 |
Chr8:53400062 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C22 |
Chr8:53400315 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B24 |
Chr8:53400320 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B24 |
Chr8:53400683 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B44,D10 |
Chr8:53400708 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B130,B6 |
Chr8:53401226 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B130,B6 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057780562.1PF00291
PALP 55-342 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057780562.1 |
Pfam | PF00291 |
PALP | Family | 55 | 342 | 2.1e-74 | 251.2 | Pyridoxal-phosphate dependent enzyme |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。