Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G004390`

染色体: Chr08 坐标: 53661820-53663656 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G004390`
名称	SmilChr08G004390
描述	uncharacterized SmilChr08G004390
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	53661820 - 53663656 / `-`

ID 对照

NCBI Gene ID	`LOC130999111`
GeneID	`130999111`
locus_tag	`-`
NCBI Name	`LOC130999111`
原始查询	`LOC130999111`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	F-box and associated interaction domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:843374]; symbol=AT1G70380; hit=AT1G70380; species=arabidopsis; confidence=weak
产物	F-box and associated interaction domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:843374]; symbol=AT1G70380; hit=AT1G70380; species=arabidopsis; confidence=weak
Arabidopsis	`AT1G70380` (AT1G70380) F-box and associated interaction domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:843374] identity=23.2; qcov=0.559; evalue=2.06e-07; confidence=weak
Rice	`-` -
GO	GO:0004842 (ubiquitin-protein transferase activity); GO:0031146 (SCF-dependent proteasomal ubiquitin-dependent protein catabolic process)
KEGG	-
Pfam	PF03478 (Beta-prop_KIB1-4); PF07734 (FBA_1); PF08268 (FBA_3)
InterPro	-
eggNOG	-
NR	GeneID:130999111

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	0.80000	`XP_057780592.1`
2	Cytoplasm	细胞质	0.80000	`XP_057780592.1`
3	Chromosome	染色体	0.00000	`XP_057780592.1`
4	Centromere	着丝粒	0.00000	`XP_057780592.1`
5	Chromatin	染色质	0.00000	`XP_057780592.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:53662113`	`CA`	`*`	1bp_deletion	CDS_variant	3	B124,C28,C61
`Chr8:53662127`	`A`	`AT`	1bp_insertion	frameshift_variant	66	A13,A21,A22,A25,A3,A6,A7,A9,B1,B109,B112,B126,B129,B131,B133,B135,B136,B14,B15,B17,B25,B27,B32,B33,B35,B37,B38,B39,B42,B43,B66,B68,B69,B75,B76,B77,B83,B86,B89,B9,B90,B92,B98,C1,C12,C15,C16,C17,C19,C20,C3,C37,C38,C44,C46,C47,C48,C55,C59,C6,C73,C78,C8,C81,D1,D5
`Chr8:53662146`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr8:53662153`	`A`	`AT`	1bp_insertion	frameshift_variant	6	B115,B57,B79,B93,C17,C9
`Chr8:53662164`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B68
`Chr8:53662343`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B65
`Chr8:53662381`	`GCC`	`G`	2bp_deletion	frameshift_variant	59	A10,A13,A14,A15,A16,A19,A3,A8,A9,B106,B111,B115,B120,B122,B125,B127,B137,B14,B16,B23,B30,B45,B48,B49,B57,B6,B61,B64,B71,B72,B73,B83,B85,B89,B93,C1,C10,C17,C22,C27,C29,C32,C33,C37,C38,C49,C51,C56,C66,C72,C76,C79,C81,C83,C9,D10,D4,D7,D9
`Chr8:53662548`	`GA`	`G`	1bp_deletion	frameshift_variant	107	A1,A11,A14,A18,A2,A20,A22,A24,A3,A4,A5,A7,A9,B10,B101,B103,B104,B105,B11,B112,B117,B119,B12,B121,B127,B129,B130,B131,B132,B136,B139,B140,B17,B18,B19,B20,B24,B25,B26,B31,B32,B33,B35,B36,B38,B39,B41,B45,B48,B5,B54,B56,B57,B66,B67,B68,B69,B70,B77,B78,B79,B8,B82,B84,B88,B91,B93,B94,B95,B96,B97,C15,C18,C22,C23,C30,C31,C32,C33,C39,C4,C41,C42,C46,C48,C49,C50,C51,C53,C55,C59,C6,C60,C65,C68,C70,C74,C76,C77,C80,C81,C82,C85,D11,D2,D6,D7
`Chr8:53662568`	`CAG`	`C`	2bp_deletion	frameshift_variant	1	C21
`Chr8:53662568`	`CAG`	`C`	2bp_deletion	CDS_variant	1	C21
`Chr8:53662580`	`GCT`	`*`	2bp_deletion	CDS_variant	5	B53,B60,B87,C21,D3
`Chr8:53662593`	`CA`	`*`	1bp_deletion	CDS_variant	5	B53,B60,B87,C21,D3

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780592.1

401 aa

200

401

FBA_3

Beta-prop_KIB1-4

FBA_1

PF08268 FBA_3 34-280 aa PF03478 Beta-prop_KIB1-4 37-220 aa PF07734 FBA_1 46-322 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057780592.1`	Pfam	`PF08268`	FBA_3	Repeat	34	280	1.1e-11	45.0	F-box associated beta propeller domain
`XP_057780592.1`	Pfam	`PF03478`	Beta-prop_KIB1-4	Repeat	37	220	5.3e-08	33.4	KIB1-4 beta-propeller
`XP_057780592.1`	Pfam	`PF07734`	FBA_1	Repeat	46	322	7.9e-14	52.1	F-box associated beta propeller domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XR_009093417.1
TAAGAATTAGGGCTCATTCCCTTTCTTCTTTCAAACACGAAAGAGAGCATATTAGGGTTCATTCATTATTCCCTTTCTTCCTCTTCTTCTTGGAAAGCCATCAATTTTTGATCGACGATGAAGAATTCCGGCGAGACACGGCTTGTTGTGAAACGCAACCATGGAAAAGGTGGTACGTGTTATTTAAGTGGTCTTTCTCCCCAAGATTTATCTGAAATCCCTGAATATAGGTTAGACCTTCCTTTTATGTATCAAATGGA...

XM_057924609.1
TAAGAATTAGGGCTCATTCCCTTTCTTCTTTCAAACACGAAAGAGAGCATATTAGGGTTCATTCATTATTCCCTTTCTTCCTCTTCTTCTTGGAAAGCCATCAATTTTTGATCGACGATGAAGAATTCCGGCGAGACACGGCTTGTTGTGAAACGCAACCATGGAAAAGGTGGTACGTGTTATTTAAGTGGTCTTTCTCCCCAAGATTTATCTGAAATCCCTGAATATAGGTTAGACCTTCCTTTTATGTATCAAATGGA...

CDS

1 records

下载 CDS FASTA

LOC130999111
ATGAAGAATTCCGGCGAGACACGGCTTGTTGTGAAACGCAACCATGGAAAAGGTGGTACGTGTTATTTAAGTGGTCTTTCTCCCCAAGATTTATCTGAAATCCCTGAATATAGGTTAGACCTTCCTTTTATGTATCAAATGGATCCGACTGGTATTCGCAGTTGCAGCGGGGGTTTGTTGTCAATGGCCGATTCTAGTGGTCGTATTTATCTTTGCAACCCCACAACCAAACAGTTTCAGATCCTTGAGCCCAAGGAAAC...

Protein

1 records

下载 Protein FASTA

XP_057780592.1
MKNSGETRLVVKRNHGKGGTCYLSGLSPQDLSEIPEYRLDLPFMYQMDPTGIRSCSGGLLSMADSSGRIYLCNPTTKQFQILEPKETPYGTPSLSVTAIIGSCVGYDSKSDDYRILRVCERRHTLGIGNPREKHRTYDLYSLRDDSWKPIEPPKFHCRLSGTDHTIIYARDKFYWSTLDFQVMCYDCSEERFYLLPSPPNTRGLHLEPVKFYEADSLGVVLCRPRKTNRETIKPDFYFELWIWRDGARCWDRVFYVSLGG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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