Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G004431`

染色体: Chr08 坐标: 54009874-54011918 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G004431`
名称	SmilChr08G004431
描述	(+)-neomenthol dehydrogenase-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	54009874 - 54011918 / `-`

ID 对照

NCBI Gene ID	`LOC130999148`
GeneID	`130999148`
locus_tag	`-`
NCBI Name	`LOC130999148`
原始查询	`LOC130999148`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	(+)-neomenthol dehydrogenase-like
产物	(+)-neomenthol dehydrogenase-like
Arabidopsis	`AT3G61220` (SDR1) NAD(P)-binding Rossmann-fold superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:825294] identity=56.2; qcov=1; evalue=6.58e-122; confidence=high
Rice	`Os04g0531900` - identity=49.8; qcov=0.98; evalue=1.32e-95; confidence=high
GO	GO:0016020 (membrane); GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor)
KEGG	smil00902 (Monoterpenoid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF00106 (adh_short); PF01370 (Epimerase); PF08659 (KR); PF13561 (adh_short_C2)
InterPro	-
eggNOG	-
NR	GeneID:130999148

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057780635.1`
2	Cytoplasm	细胞质	0.60000	`XP_057780635.1`
3	Nucleus	细胞核	0.00000	`XP_057780635.1`
4	Chromosome	染色体	0.00000	`XP_057780635.1`
5	Centromere	着丝粒	0.00000	`XP_057780635.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:54010085`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B13,B30,C25,C32,D9
`Chr8:54010183`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B126,C19,C47
`Chr8:54010184`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr8:54010231`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A4,B126,C14,C19,C47
`Chr8:54010291`	`CTG`	`C`	2bp_deletion	frameshift_variant	6	A20,B21,B45,B88,C50,C52
`Chr8:54010903`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A10,A4,C51,C63
`Chr8:54010963`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B30,C25,D9
`Chr8:54011076`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B53,B66,C32,C42,C68
`Chr8:54011126`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B10,B109,B6
`Chr8:54011613`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C1
`Chr8:54011659`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B46,B99,C87
`Chr8:54011691`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D3

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780635.1

303 aa

152

303

adh_short

Epimerase

adh_short_C2

adh_short

adh_short_C2

PF00106 adh_short 7-179 aa PF08659 KR 10-96 aa PF01370 Epimerase 10-97 aa PF13561 adh_short_C2 15-107 aa PF00106 adh_short 220-262 aa PF13561 adh_short_C2 224-265 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057780635.1`	Pfam	`PF00106`	adh_short	Domain	7	179	3.6e-37	128.4	short chain dehydrogenase
`XP_057780635.1`	Pfam	`PF08659`	KR	Family	10	96	9.8e-06	26.3	KR domain
`XP_057780635.1`	Pfam	`PF01370`	Epimerase	Family	10	97	2.5e-06	27.8	NAD dependent epimerase/dehydratase family
`XP_057780635.1`	Pfam	`PF13561`	adh_short_C2	Domain	15	107	1.3e-27	97.6	Enoyl-(Acyl carrier protein) reductase
`XP_057780635.1`	Pfam	`PF00106`	adh_short	Domain	220	262	3.6e-37	128.4	short chain dehydrogenase
`XP_057780635.1`	Pfam	`PF13561`	adh_short_C2	Domain	224	265	1.3e-27	97.6	Enoyl-(Acyl carrier protein) reductase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057924652.1
CTAAAAATTACTAAAATTGAGAAGTTTAAATAAACACCCCCCGCCCCCTCGGGAAGATTGAAGTCAACGTTGCACAACATCTCTCATCCATGGCGGAAACAAAAACCAAGTATGCGGTGGTCACAGGATCAAACAAAGGGATCGGATTCGAGATTTGTAGGCAGTTGGCGTCGAAAGGCGTGACGGTTGTGGTGACCGCCAGAGACGAGAAGAGAGGGCTCGAAGCTCTTGAGAAACTCAAAGCCTTCGGCCTTTCCGAT...

CDS

1 records

下载 CDS FASTA

LOC130999148
ATGGCGGAAACAAAAACCAAGTATGCGGTGGTCACAGGATCAAACAAAGGGATCGGATTCGAGATTTGTAGGCAGTTGGCGTCGAAAGGCGTGACGGTTGTGGTGACCGCCAGAGACGAGAAGAGAGGGCTCGAAGCTCTTGAGAAACTCAAAGCCTTCGGCCTTTCCGATTTTGTCATCTTTCATCAGCTTGATGTTACCGATCAAGCAAGCATTGCTTCTTTCGCTCAATTCATTCGATCCAACGTCGGGAAGCTTGA...

Protein

1 records

下载 Protein FASTA

XP_057780635.1
MAETKTKYAVVTGSNKGIGFEICRQLASKGVTVVVTARDEKRGLEALEKLKAFGLSDFVIFHQLDVTDQASIASFAQFIRSNVGKLDILINNAGIGGTLLDHDAFRASSAAAGGTADAEAKINWRELLSESYELALSCLQTNYYGAKLTTEALLPSLHLSASPTIVNVSSASGKLKYVGNEWAKGVLRDVGNLTEERIDEVVNEFLRDMDEGCLEGKEWPQLLAAYTVSKAAMNAYTRLLAKKEPGIRINSVCPGYVRTD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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