当前解析结果
SmilChr08G004504| 统一新 Gene ID | SmilChr08G004504 |
|---|---|
| 名称 | SmilChr08G004504 |
| 描述 | transportin MOS14 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 54640029 - 54653368 / + |
| NCBI Gene ID | LOC130999226 |
|---|---|
| GeneID | 130999226 |
| locus_tag | - |
| NCBI Name | LOC130999226 |
| 原始查询 | LOC130999226 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | transportin MOS14 |
| 产物 | transportin MOS14 |
| Arabidopsis | AT5G62600 (MOS14)ARM repeat superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:836381] identity=65.3; qcov=0.998; evalue=0; confidence=high |
| Rice | Os10g0477800- identity=62; qcov=0.996; evalue=0; confidence=high |
| GO | GO:0005737 (cytoplasm); GO:0006606 (protein import into nucleus); GO:0031267 (small GTPase binding); GO:0031965 (nuclear membrane) |
| KEGG | smil03013 (Nucleocytoplasmic transport - Salvia miltiorrhiza (redroot sage)); smil03250 (Viral life cycle - HIV-1 - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF03810 (IBN_N); PF08389 (Xpo1); PF24138 (TPR_TNPO3_IPO13_2nd); PF24139 (TPR_TNPO3_IPO13_4th); PF24140 (TPR_TNPO3_IPO13_3rd) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999226 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057780714.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057780714.1 |
| 3 | Cytosol | 细胞质基质 | 0.80000 | XP_057780714.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057780714.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057780714.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:54640290 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C74,D11 |
Chr8:54642097 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B67,C49 |
Chr8:54649829 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr8:54649873 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B31,C63,C67 |
Chr8:54649920 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C6 |
Chr8:54649949 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D4 |
Chr8:54650384 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B73,C50 |
Chr8:54650634 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B52 |
Chr8:54650906 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A19,C12 |
Chr8:54651947 |
TCC |
T |
2bp_deletion | frameshift_variant | 56 | A19,A22,A6,B100,B101,B107,B108,B109,B11,B113,B115,B134,B136,B140,B17,B19,B21,B35,B4,B40,B44,B46,B51,B6,B7,B71,B77,B8,B81,B91,B97,C1,C14,C16,C2,C26,C28,C34,C42,C47,C49,C50,C54,C58,C59,C62,C63,C65,C68,C70,C72,C77,C81,C83,C9,D2 |
Chr8:54652564 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B67,C49 |
Chr8:54652832 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C83 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057780714.1PF03810
IBN_N 26-86 aa
PF08389
Xpo1 98-243 aa
PF24138
TPR_TNPO3_IPO13_2nd 285-353 aa
PF24140
TPR_TNPO3_IPO13_3rd 474-563 aa
PF24139
TPR_TNPO3_IPO13_4th 655-752 aa
XP_057780715.1PF08389
Xpo1 2-110 aa
PF24138
TPR_TNPO3_IPO13_2nd 152-220 aa
PF24140
TPR_TNPO3_IPO13_3rd 341-430 aa
PF24139
TPR_TNPO3_IPO13_4th 522-619 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057780714.1 |
Pfam | PF03810 |
IBN_N | Repeat | 26 | 86 | 1.3e-07 | 32.2 | Importin-beta N-terminal domain |
XP_057780714.1 |
Pfam | PF08389 |
Xpo1 | Repeat | 98 | 243 | 2.2e-22 | 80.4 | Exportin 1-like protein |
XP_057780714.1 |
Pfam | PF24138 |
TPR_TNPO3_IPO13_2nd | Repeat | 285 | 353 | 2.6e-16 | 60.4 | Transportin-3/Importin-13 second TPR domain |
XP_057780714.1 |
Pfam | PF24140 |
TPR_TNPO3_IPO13_3rd | Repeat | 474 | 563 | 1e-07 | 32.8 | Transportin-3/Importin-13 third TPR domain |
XP_057780714.1 |
Pfam | PF24139 |
TPR_TNPO3_IPO13_4th | Repeat | 655 | 752 | 3.2e-17 | 63.2 | Transportin-3/Importin-13 fourth TPR domain |
XP_057780715.1 |
Pfam | PF08389 |
Xpo1 | Repeat | 2 | 110 | 8.9e-16 | 59.0 | Exportin 1-like protein |
XP_057780715.1 |
Pfam | PF24138 |
TPR_TNPO3_IPO13_2nd | Repeat | 152 | 220 | 2.1e-16 | 60.8 | Transportin-3/Importin-13 second TPR domain |
XP_057780715.1 |
Pfam | PF24140 |
TPR_TNPO3_IPO13_3rd | Repeat | 341 | 430 | 3.5e-08 | 34.3 | Transportin-3/Importin-13 third TPR domain |
XP_057780715.1 |
Pfam | PF24139 |
TPR_TNPO3_IPO13_4th | Repeat | 522 | 619 | 4.7e-17 | 62.7 | Transportin-3/Importin-13 fourth TPR domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。