Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G004510

染色体: Chr08 坐标: 54736535-54748296 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G004510
名称SmilChr08G004510
描述uncharacterized SmilChr08G004510
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向54736535 - 54748296 / +

ID 对照

NCBI Gene IDLOC130999233
GeneID130999233
locus_tag-
NCBI NameLOC130999233
原始查询LOC130999233

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:843825]; symbol=AT1G74860; hit=AT1G74860; species=arabidopsis; confidence=low
产物uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:843825]; symbol=AT1G74860; hit=AT1G74860; species=arabidopsis; confidence=low
ArabidopsisAT1G74860 (AT1G74860)
uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:843825]
identity=37.8; qcov=0.438; evalue=5.18e-27; confidence=low
RiceOs02g0580700
-
identity=32.3; qcov=0.575; evalue=1.41e-15; confidence=low
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:130999233

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057780727.1
2 Chromosome 染色体 0.20000 XP_057780727.1
3 Centromere 着丝粒 0.00000 XP_057780727.1
4 Chromatin 染色质 0.00000 XP_057780727.1
5 Telomere 端粒 0.00000 XP_057780727.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:54737250 G A EMS_canonical_SNV CDS_variant 2 C82,C85
Chr8:54738422 C T EMS_canonical_SNV CDS_variant 3 B106,B11,B81
Chr8:54738497 G A EMS_canonical_SNV CDS_variant 4 A18,B117,C82,C85
Chr8:54738595 C T EMS_canonical_SNV CDS_variant 4 A18,B117,C82,C85
Chr8:54738653 G A EMS_canonical_SNV CDS_variant 5 B117,B40,C82,C85,D10
Chr8:54738799 C T EMS_canonical_SNV CDS_variant 1 B133
Chr8:54738863 C T EMS_canonical_SNV CDS_variant 2 C82,C85
Chr8:54738867 G A EMS_canonical_SNV CDS_variant 1 B117
Chr8:54738950 G A EMS_canonical_SNV CDS_variant 2 B53,C78
Chr8:54738986 G A EMS_canonical_SNV CDS_variant 5 B6,C31,C34,C46,C59
Chr8:54739083 C T EMS_canonical_SNV CDS_variant 1 B117
Chr8:54739105 C T EMS_canonical_SNV CDS_variant 2 A18,C85

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057924744.1
ATTCATAACAGACAGCTCTGCTGAGCAAGTGCATAAATTAAAAGACCAAAACAAACTGAAAGAAAGCTATTTTCCGGTCTGAAAAACCTCAAGCAGAAAAAAAGTTTTGATTTTTTCAAGGAAGGAAATCCGATTATGGACGCCGACGAGAAATTGACGGCGTTGAAGAAGGCATATGCTGATATAATATTGGGGATATCTAAGGAGGCAGCGGCGAGGGTTATGGCCTCGGAGAAGAAGTCAGTAAGGTTTCAGCACGA...

CDS

1 records

下载 CDS FASTA
LOC130999233
ATGGACGCCGACGAGAAATTGACGGCGTTGAAGAAGGCATATGCTGATATAATATTGGGGATATCTAAGGAGGCAGCGGCGAGGGTTATGGCCTCGGAGAAGAAGTCAGTAAGGTTTCAGCACGAGCTGAAGGCCACGAAGGAGGAGGGCGTGCGAATGCTGATGCGTCTCAAGCATATGATGGATGCTCAGAATAGTGAAGCTGAAGCAGCAGCCTTGCATCAGCAGAATAAGATTGATGAGCTCGAAGCTCAACTTCA...

Protein

1 records

下载 Protein FASTA
XP_057780727.1
MDADEKLTALKKAYADIILGISKEAAARVMASEKKSVRFQHELKATKEEGVRMLMRLKHMMDAQNSEAEAAALHQQNKIDELEAQLQEAEDIVRDLRDELADVQAELERTKSESSHHVVKPNSACSVEMPADDKISSYQSYEYLPPNKSSVAVGATVPYSVQRNECHKCYTKIACTCGAYIRNRDLPSIILRGKDSGRYRNGCTQRIRACERNHLGRDLCLSEETDKATDKKNGTEQMEGRHSSEGPASGGKILSELEKK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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