Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004077`

染色体: Chr01 坐标: 59204734-59207177 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004077`
名称	SmilChr01G004077
描述	uncharacterized SmilChr01G004077
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	59204734 - 59207177 / `+`

ID 对照

NCBI Gene ID	`LOC130999243`
GeneID	`130999243`
locus_tag	`-`
NCBI Name	`LOC130999243`
原始查询	`LOC130999243`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	splicing factor Prp18 family protein [Source:NCBI gene (formerly Entrezgene);Acc:839567]; symbol=AT1G03140; hit=AT1G03140; species=arabidopsis; confidence=high
产物	splicing factor Prp18 family protein [Source:NCBI gene (formerly Entrezgene);Acc:839567]; symbol=AT1G03140; hit=AT1G03140; species=arabidopsis; confidence=high
Arabidopsis	`AT1G03140` (AT1G03140) splicing factor Prp18 family protein [Source:NCBI gene (formerly Entrezgene);Acc:839567] identity=69; qcov=1.01; evalue=0; confidence=high
Rice	`Os07g0571900` - identity=60.6; qcov=1.06; evalue=1.2e-169; confidence=high
GO	GO:0000350 (generation of catalytic spliceosome for second transesterification step); GO:0005682 (U5 snRNP); GO:0008380 (RNA splicing); GO:0046540 (U4/U6 x U5 tri-snRNP complex); GO:0071021 (U2-type post-spliceosomal complex)
KEGG	smil03040 (Spliceosome - Salvia miltiorrhiza (redroot sage))
Pfam	PF02840 (Prp18); PF08799 (PRP4)
InterPro	-
eggNOG	-
NR	GeneID:130999243

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057780741.1`
2	Nucleoplasm	核质	0.40000	`XP_057780741.1`
3	Nucleolus	核仁	0.20000	`XP_057780741.1`
4	Chromosome	染色体	0.00000	`XP_057780741.1`
5	Centromere	着丝粒	0.00000	`XP_057780741.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:59204802`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B105,B75
`Chr1:59204902`	`C`	`T`	EMS_canonical_SNV	stop_gained	7	B20,B81,C1,C58,C82,C9,D11
`Chr1:59205038`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C9
`Chr1:59205042`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C26
`Chr1:59205102`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C53
`Chr1:59205378`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B129
`Chr1:59205453`	`GC`	`G`	1bp_deletion	frameshift_variant	1	B92
`Chr1:59205453`	`GC`	`G`	1bp_deletion	CDS_variant	1	B92
`Chr1:59205486`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C53
`Chr1:59206741`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B20,B40,C84
`Chr1:59206921`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B133,B29,B4

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780741.1

415 aa

208

415

PRP4

Prp18

PF08799 PRP4 106-133 aa PF02840 Prp18 228-369 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057780741.1`	Pfam	`PF08799`	PRP4	Domain	106	133	3.9e-11	43.0	pre-mRNA processing factor 4 (PRP4) like
`XP_057780741.1`	Pfam	`PF02840`	Prp18	Family	228	369	4.8e-62	209.0	Prp18 domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057924758.1
ATGGATATTCTGAAGCAGGAATTGATGAAGAAACGGGAAAGTTTGGCGCAGGACGTCGGCGGAAAGAAGTTTTTCAAGCGATCGGAAATCGAGCAGAAACGCCTCCAGCGGCTGCGGGAGGAGGAGAAACGCGAAGCCGAGGCCAAATCCCTCCGCCAGAAGCAGCTGCAGCAAGATCATCAGAGTAAGGATCCGAAATCATCGTCAGACCCTAATTCGAACACCGAAAACGCGAAGTCCAAGCCCGAATCGTCCTCCTC...

CDS

1 records

下载 CDS FASTA

LOC130999243
ATGGATATTCTGAAGCAGGAATTGATGAAGAAACGGGAAAGTTTGGCGCAGGACGTCGGCGGAAAGAAGTTTTTCAAGCGATCGGAAATCGAGCAGAAACGCCTCCAGCGGCTGCGGGAGGAGGAGAAACGCGAAGCCGAGGCCAAATCCCTCCGCCAGAAGCAGCTGCAGCAAGATCATCAGAGTAAGGATCCGAAATCATCGTCAGACCCTAATTCGAACACCGAAAACGCGAAGTCCAAGCCCGAATCGTCCTCCTC...

Protein

1 records

下载 Protein FASTA

XP_057780741.1
MDILKQELMKKRESLAQDVGGKKFFKRSEIEQKRLQRLREEEKREAEAKSLRQKQLQQDHQSKDPKSSSDPNSNTENAKSKPESSSSKSLVEEQNIDNLNLPKQEVVRRLRFLKQPVTLFGEDDEARLDRLKYVLKTGLFEVDDDMTEGQTNDFLRDIVELKKRQKSGIVSDRKRKSRREDAGEDEDGGDGDKDLSGDGASSGVDHDKDIKRMKANFDELCDEDKILVFFKKLLNEWNQELDEMSETEKRTAKGKSMVAT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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