Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G004570`

染色体: Chr08 坐标: 55279534-55286233 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G004570`
名称	SmilChr08G004570
描述	alpha-N-acetylglucosaminidase-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	55279534 - 55286233 / `-`

ID 对照

NCBI Gene ID	`LOC130999278`
GeneID	`130999278`
locus_tag	`-`
NCBI Name	`LOC130999278`
原始查询	`LOC130999278`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	alpha-N-acetylglucosaminidase-like
产物	alpha-N-acetylglucosaminidase-like
Arabidopsis	`AT5G13690` (CYL1) alpha-N-acetylglucosaminidase family / NAGLU family [Source:NCBI gene (formerly Entrezgene);Acc:831214] identity=60.4; qcov=0.949; evalue=0; confidence=high
Rice	`Os04g0650900` - identity=82.7; qcov=0.154; evalue=3.38e-71; confidence=weak
GO	-
KEGG	smil00531 (Glycosaminoglycan degradation - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil04142 (Lysosome biogenesis - Salvia miltiorrhiza (redroot sage))
Pfam	PF05089 (NAGLU); PF12971 (NAGLU_N); PF12972 (NAGLU_C)
InterPro	-
eggNOG	-
NR	GeneID:130999278

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Vacuole	液泡	1.00000	`XP_057780770.1`
2	Nucleus	细胞核	0.00000	`XP_057780770.1`
3	Chromosome	染色体	0.00000	`XP_057780770.1`
4	Centromere	着丝粒	0.00000	`XP_057780770.1`
5	Chromatin	染色质	0.00000	`XP_057780770.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:55280112`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C68,D3,D4
`Chr8:55280258`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B13,B140,B9,C34,C5
`Chr8:55280279`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B41
`Chr8:55280442`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B41
`Chr8:55280451`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B41
`Chr8:55280472`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B56,C9
`Chr8:55280484`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B41
`Chr8:55280496`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B41
`Chr8:55280526`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B13,B28,B9,C34,C5
`Chr8:55280555`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B19,C32
`Chr8:55280556`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C37
`Chr8:55280570`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B13,B9,C34,C5

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780770.1

828 aa

414

828

NAGLU_N

NAGLU

NAGLU_C

PF12971 NAGLU_N 53-148 aa PF05089 NAGLU 165-501 aa PF12972 NAGLU_C 510-809 aa

XP_057780771.1

827 aa

414

827

NAGLU_N

NAGLU

NAGLU_C

PF12971 NAGLU_N 53-148 aa PF05089 NAGLU 165-500 aa PF12972 NAGLU_C 509-808 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057780770.1`	Pfam	`PF12971`	NAGLU_N	Domain	53	148	2.8e-23	82.4	Alpha-N-acetylglucosaminidase (NAGLU) N-terminal domain
`XP_057780770.1`	Pfam	`PF05089`	NAGLU	Domain	165	501	8.5e-141	469.5	Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain
`XP_057780770.1`	Pfam	`PF12972`	NAGLU_C	Domain	510	809	4.4e-84	283.1	Alpha-N-acetylglucosaminidase (NAGLU) C-terminal domain
`XP_057780771.1`	Pfam	`PF12971`	NAGLU_N	Domain	53	148	2.8e-23	82.4	Alpha-N-acetylglucosaminidase (NAGLU) N-terminal domain
`XP_057780771.1`	Pfam	`PF05089`	NAGLU	Domain	165	500	2.9e-142	474.3	Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain
`XP_057780771.1`	Pfam	`PF12972`	NAGLU_C	Domain	509	808	4.4e-84	283.1	Alpha-N-acetylglucosaminidase (NAGLU) C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057924788.1
AGGTACAAAAGGTACATTACAAAATGCCCGCCAGCAACCTCCAAAGGTAGTTGAAAACACACACACTCTCTCTCTCTGCGGCCGGCAACTTTGTCTTCATCCTCTCCCATCTCCACTCACACACACTACACACACTAAAAGATGCCTAATTCCCCCTCTTCTCTACCACCTCCTCTATATATACGCAAACCCCCTTTAGCTCACTCTACCGTTTCTGTTTCCTCACACAATCCATGGCGGCTTTCCCATATTTATGCTTT...

XM_057924787.1
CAGCAACCTCCAAAGGTAGTTGAAAACACACACACTCTCTCTCTCTGCGGCCGGCAACTTTGTCTTCATCCTCTCCCATCTCCACTCACACACACTACACACACTAAAAGATGCCTAATTCCCCCTCTTCTCTACCACCTCCTCTATATATACGCAAACCCCCTTTAGCTCACTCTACCGTTTCTGTTTCCTCACACAATCCATGGCGGCTTTCCCATATTTATGCTTTGCTTTGATTTTTCTATTCATTTCTATCAACG...

CDS

2 records

下载 CDS FASTA

LOC130999278
ATGGCGGCTTTCCCATATTTATGCTTTGCTTTGATTTTTCTATTCATTTCTATCAACGGCGTGCCAGTGGCAGAATCCTCCACTCTCGGGGTGGGCTACATTTCACGGCTGCTGGAGATTCAGGACCGCGAGAGATCGCCGCCGCCTGTCCAAGTCGCCGCCGCCCACGCCGCCCTCAACCGCCTCATTCCCTCCCATTCTTCCAGTTTTCAGCTCCGCATCATCTCTAAGGATAACTGTGGTGGAGAATATTGCTTTAG...

Protein

2 records

下载 Protein FASTA

XP_057780770.1
MAAFPYLCFALIFLFISINGVPVAESSTLGVGYISRLLEIQDRERSPPPVQVAAAHAALNRLIPSHSSSFQLRIISKDNCGGEYCFRLSNNPAINHGGSPEILISGTTGVEILSGLHWYLKYYCGAHISWNKTGGAQLSSVPKPGSLPHIQDSEITIKRPTPWSYYQNAVSSSYSFAWWDWERWEKEIDWMALQGINLPLAFTGQEAIWQKVFQQNFNISAQDLDDFFGGPAFLAWSRMGNLHGWGGPLPQTWLDQQLLM...

XP_057780771.1
MAAFPYLCFALIFLFISINGVPVAESSTLGVGYISRLLEIQDRERSPPPVQVAAAHAALNRLIPSHSSSFQLRIISKDNCGGEYCFRLSNNPAINHGGSPEILISGTTGVEILSGLHWYLKYYCGAHISWNKTGGAQLSSVPKPGSLPHIQDSEITIKRPTPWSYYQNAVSSSYSFAWWDWERWEKEIDWMALQGINLPLAFTGQEAIWQKVFQNFNISAQDLDDFFGGPAFLAWSRMGNLHGWGGPLPQTWLDQQLLMQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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