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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G004582

染色体: Chr08 坐标: 55405964-55408418 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G004582
名称SmilChr08G004582
描述putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向55405964 - 55408418 / +

ID 对照

NCBI Gene IDLOC130999279
GeneID130999279
locus_tag-
NCBI NameLOC130999279
原始查询LOC130999279

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial
产物putative pentatricopeptide repeat-containing protein At1g12700%2C mitochondrial
ArabidopsisAT1G63130 (AT1G63130)
Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:842617]
identity=35.8; qcov=0.83; evalue=3.45e-125; confidence=medium
RiceOs10g0495200 (Rf4)
-
identity=33.7; qcov=0.793; evalue=7.43e-105; confidence=low
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:130999279

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 0.80000 XP_057780772.1
2 Chloroplast 叶绿体 0.40000 XP_057780772.1
3 Nucleus 细胞核 0.00000 XP_057780772.1
4 Chromosome 染色体 0.00000 XP_057780772.1
5 Centromere 着丝粒 0.00000 XP_057780772.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:55406210 C T EMS_canonical_SNV CDS_variant 1 B128
Chr8:55406333 C T EMS_canonical_SNV CDS_variant 3 B108,B126,C49
Chr8:55406501 G A EMS_canonical_SNV CDS_variant 3 B22,C63,C83
Chr8:55406505 G A EMS_canonical_SNV CDS_variant 3 B22,C63,C83
Chr8:55406511 G A EMS_canonical_SNV CDS_variant 4 B22,C63,C8,C83
Chr8:55406574 G A EMS_canonical_SNV CDS_variant 1 D10
Chr8:55406592 C T EMS_canonical_SNV CDS_variant 4 A18,A3,C65,C83
Chr8:55406612 C T EMS_canonical_SNV CDS_variant 1 C82
Chr8:55406613 G A EMS_canonical_SNV CDS_variant 4 A8,B32,B52,B95
Chr8:55406617 C T EMS_canonical_SNV CDS_variant 1 B104
Chr8:55406618 C T EMS_canonical_SNV CDS_variant 5 B19,B69,B85,B95,C75
Chr8:55406619 G A EMS_canonical_SNV CDS_variant 3 B122,C49,C67

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780772.1
681 aa
N
1
340
681
PPR_2
PPR_1
PPR_3
PPR_2
PPR
PPR_long
PPR_1
PPR_3
PPR_2
TPR_24
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR
PPR_1
PPR_3
PPR_2
PPR
PPR_1
PPR_2
PPR
TPR_24
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR
PPR_2
PPR_3
TPR_24
PPR_1
PPR
PPR_2
PPR_1
PPR_2
PPR
C
PF13041 PPR_2 153-203 aa PF12854 PPR_1 187-214 aa PF13812 PPR_3 188-236 aa PF13041 PPR_2 189-240 aa PF01535 PPR 192-218 aa PF17177 PPR_long 194-341 aa PF12854 PPR_1 224-252 aa PF13812 PPR_3 225-271 aa PF13041 PPR_2 226-275 aa PF23276 TPR_24 228-318 aa PF01535 PPR 230-259 aa PF13812 PPR_3 250-305 aa PF12854 PPR_1 257-289 aa PF13041 PPR_2 261-309 aa PF01535 PPR 264-292 aa PF13812 PPR_3 285-343 aa PF12854 PPR_1 294-325 aa PF13041 PPR_2 296-337 aa PF01535 PPR 300-326 aa PF13812 PPR_3 323-376 aa PF12854 PPR_1 329-356 aa PF13041 PPR_2 331-379 aa PF01535 PPR 334-363 aa PF13812 PPR_3 354-415 aa PF12854 PPR_1 363-391 aa PF13041 PPR_2 366-415 aa PF01535 PPR 369-399 aa PF12854 PPR_1 398-426 aa PF01535 PPR 404-426 aa PF12854 PPR_1 434-465 aa PF13812 PPR_3 434-481 aa PF13041 PPR_2 436-484 aa PF01535 PPR 439-466 aa PF12854 PPR_1 469-500 aa PF13041 PPR_2 471-518 aa PF01535 PPR 475-504 aa PF23276 TPR_24 476-567 aa PF13812 PPR_3 495-554 aa PF12854 PPR_1 502-532 aa PF13041 PPR_2 506-555 aa PF01535 PPR 509-539 aa PF12854 PPR_1 537-568 aa PF01535 PPR 544-574 aa PF13041 PPR_2 548-589 aa PF13812 PPR_3 565-620 aa PF23276 TPR_24 565-658 aa PF12854 PPR_1 572-605 aa PF01535 PPR 579-609 aa PF13041 PPR_2 584-625 aa PF12854 PPR_1 607-639 aa PF13041 PPR_2 611-657 aa PF01535 PPR 614-644 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057780772.1 Pfam PF13041 PPR_2 Repeat 153 203 9e-191 618.7 PPR repeat family
XP_057780772.1 Pfam PF12854 PPR_1 Repeat 187 214 7.1e-159 515.9 PPR repeat
XP_057780772.1 Pfam PF13812 PPR_3 Repeat 188 236 6.7e-75 247.8 Pentatricopeptide repeat domain
XP_057780772.1 Pfam PF13041 PPR_2 Repeat 189 240 9e-191 618.7 PPR repeat family
XP_057780772.1 Pfam PF01535 PPR Repeat 192 218 2.2e-107 344.8 PPR repeat
XP_057780772.1 Pfam PF17177 PPR_long Repeat 194 341 1.6e-27 97.0 Pentacotripeptide-repeat region of PRORP
XP_057780772.1 Pfam PF12854 PPR_1 Repeat 224 252 7.1e-159 515.9 PPR repeat
XP_057780772.1 Pfam PF13812 PPR_3 Repeat 225 271 6.7e-75 247.8 Pentatricopeptide repeat domain
XP_057780772.1 Pfam PF13041 PPR_2 Repeat 226 275 9e-191 618.7 PPR repeat family
XP_057780772.1 Pfam PF23276 TPR_24 Repeat 228 318 4.6e-38 130.9 Pentatricopeptide repeat-containing protein
XP_057780772.1 Pfam PF01535 PPR Repeat 230 259 2.2e-107 344.8 PPR repeat
XP_057780772.1 Pfam PF13812 PPR_3 Repeat 250 305 6.7e-75 247.8 Pentatricopeptide repeat domain
XP_057780772.1 Pfam PF12854 PPR_1 Repeat 257 289 7.1e-159 515.9 PPR repeat
XP_057780772.1 Pfam PF13041 PPR_2 Repeat 261 309 9e-191 618.7 PPR repeat family
XP_057780772.1 Pfam PF01535 PPR Repeat 264 292 2.2e-107 344.8 PPR repeat
XP_057780772.1 Pfam PF13812 PPR_3 Repeat 285 343 6.7e-75 247.8 Pentatricopeptide repeat domain
XP_057780772.1 Pfam PF12854 PPR_1 Repeat 294 325 7.1e-159 515.9 PPR repeat
XP_057780772.1 Pfam PF13041 PPR_2 Repeat 296 337 9e-191 618.7 PPR repeat family
XP_057780772.1 Pfam PF01535 PPR Repeat 300 326 2.2e-107 344.8 PPR repeat
XP_057780772.1 Pfam PF13812 PPR_3 Repeat 323 376 6.7e-75 247.8 Pentatricopeptide repeat domain
XP_057780772.1 Pfam PF12854 PPR_1 Repeat 329 356 7.1e-159 515.9 PPR repeat
XP_057780772.1 Pfam PF13041 PPR_2 Repeat 331 379 9e-191 618.7 PPR repeat family
XP_057780772.1 Pfam PF01535 PPR Repeat 334 363 2.2e-107 344.8 PPR repeat
XP_057780772.1 Pfam PF13812 PPR_3 Repeat 354 415 6.7e-75 247.8 Pentatricopeptide repeat domain
XP_057780772.1 Pfam PF12854 PPR_1 Repeat 363 391 7.1e-159 515.9 PPR repeat
XP_057780772.1 Pfam PF13041 PPR_2 Repeat 366 415 9e-191 618.7 PPR repeat family
XP_057780772.1 Pfam PF01535 PPR Repeat 369 399 2.2e-107 344.8 PPR repeat
XP_057780772.1 Pfam PF12854 PPR_1 Repeat 398 426 7.1e-159 515.9 PPR repeat
XP_057780772.1 Pfam PF01535 PPR Repeat 404 426 2.2e-107 344.8 PPR repeat
XP_057780772.1 Pfam PF12854 PPR_1 Repeat 434 465 7.1e-159 515.9 PPR repeat
XP_057780772.1 Pfam PF13812 PPR_3 Repeat 434 481 6.7e-75 247.8 Pentatricopeptide repeat domain
XP_057780772.1 Pfam PF13041 PPR_2 Repeat 436 484 9e-191 618.7 PPR repeat family
XP_057780772.1 Pfam PF01535 PPR Repeat 439 466 2.2e-107 344.8 PPR repeat
XP_057780772.1 Pfam PF12854 PPR_1 Repeat 469 500 7.1e-159 515.9 PPR repeat
XP_057780772.1 Pfam PF13041 PPR_2 Repeat 471 518 9e-191 618.7 PPR repeat family
XP_057780772.1 Pfam PF01535 PPR Repeat 475 504 2.2e-107 344.8 PPR repeat
XP_057780772.1 Pfam PF23276 TPR_24 Repeat 476 567 4.6e-38 130.9 Pentatricopeptide repeat-containing protein
XP_057780772.1 Pfam PF13812 PPR_3 Repeat 495 554 6.7e-75 247.8 Pentatricopeptide repeat domain
XP_057780772.1 Pfam PF12854 PPR_1 Repeat 502 532 7.1e-159 515.9 PPR repeat
XP_057780772.1 Pfam PF13041 PPR_2 Repeat 506 555 9e-191 618.7 PPR repeat family
XP_057780772.1 Pfam PF01535 PPR Repeat 509 539 2.2e-107 344.8 PPR repeat
XP_057780772.1 Pfam PF12854 PPR_1 Repeat 537 568 7.1e-159 515.9 PPR repeat
XP_057780772.1 Pfam PF01535 PPR Repeat 544 574 2.2e-107 344.8 PPR repeat
XP_057780772.1 Pfam PF13041 PPR_2 Repeat 548 589 9e-191 618.7 PPR repeat family
XP_057780772.1 Pfam PF13812 PPR_3 Repeat 565 620 6.7e-75 247.8 Pentatricopeptide repeat domain
XP_057780772.1 Pfam PF23276 TPR_24 Repeat 565 658 4.6e-38 130.9 Pentatricopeptide repeat-containing protein
XP_057780772.1 Pfam PF12854 PPR_1 Repeat 572 605 7.1e-159 515.9 PPR repeat
XP_057780772.1 Pfam PF01535 PPR Repeat 579 609 2.2e-107 344.8 PPR repeat
XP_057780772.1 Pfam PF13041 PPR_2 Repeat 584 625 9e-191 618.7 PPR repeat family
XP_057780772.1 Pfam PF12854 PPR_1 Repeat 607 639 7.1e-159 515.9 PPR repeat
XP_057780772.1 Pfam PF13041 PPR_2 Repeat 611 657 9e-191 618.7 PPR repeat family
XP_057780772.1 Pfam PF01535 PPR Repeat 614 644 2.2e-107 344.8 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057924789.1
TTCCAATTTCCTCAAAAAACTCATTTTTCACCTTTCTTCCTCATAAAATCCTATCTCTCATTCTTCCCCAATTCTTCAGCTTCCAATAATGAGGTCGAACCACGCCGCCATGTTTCTGGGTAGAATTTTGTCGAATTCTTCATCTAAATTCTCCACTTTTTCCATCGCCCCTCCACATTATCAATCATTTCTTGGACCCATTTTTCATTTTGATAATGCCAGCTGCCAAATGAGGAGACACTTCTCCGCCTATCATAGAT...

CDS

1 records

下载 CDS FASTA
LOC130999279
ATGAGGTCGAACCACGCCGCCATGTTTCTGGGTAGAATTTTGTCGAATTCTTCATCTAAATTCTCCACTTTTTCCATCGCCCCTCCACATTATCAATCATTTCTTGGACCCATTTTTCATTTTGATAATGCCAGCTGCCAAATGAGGAGACACTTCTCCGCCTATCATAGATTCGATTTTGAATCTATACGTGAGCCCAATGATGCCGTCGCTCTATTTCGGGAGATGGTGAGGACGCAGCCGCGCCCTTATGCTTCTGT...

Protein

1 records

下载 Protein FASTA
XP_057780772.1
MRSNHAAMFLGRILSNSSSKFSTFSIAPPHYQSFLGPIFHFDNASCQMRRHFSAYHRFDFESIREPNDAVALFREMVRTQPRPYASVFCKLLSTVVKMKQYSLALHLIDEMLQRDAPVNHYTLSIAIDCYCRQKRPDFGFAILGIFFKRGYEPDVVTFNTLLKGLLFVERIPEAAKLLGKLSVYQLCEPDEYTYNTIINGLCKAGDILQAIDLLCSLEKGKGSCKPNVYAYNIVIDGLCKEGKVDDALQLFSSLGDKGIS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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