当前解析结果
SmilChr08G004712| 统一新 Gene ID | SmilChr08G004712 |
|---|---|
| 名称 | SmilChr08G004712 |
| 描述 | putative late blight resistance protein homolog R1C-3 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 56545405 - 56548578 / - |
| NCBI Gene ID | LOC130999309 |
|---|---|
| GeneID | 130999309 |
| locus_tag | - |
| NCBI Name | LOC130999309 |
| 原始查询 | LOC130999309 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1C-3 |
| 产物 | putative late blight resistance protein homolog R1C-3 |
| Arabidopsis | AT3G46530 (RPP13)NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:823806] identity=33.7; qcov=0.566; evalue=3.38e-62; confidence=low |
| Rice | Os07g0186500- identity=34.4; qcov=0.542; evalue=2.58e-69; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999309 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057780807.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057780807.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057780807.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057780807.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057780807.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:56545873 |
ATT |
A |
2bp_deletion | frameshift_variant | 5 | A25,B125,B29,C11,C2 |
Chr8:56545873 |
ATT |
A |
2bp_deletion | CDS_variant | 5 | A25,B125,B29,C11,C2 |
Chr8:56545901 |
C |
CT |
1bp_insertion | frameshift_variant | 5 | A25,B125,B29,C11,C2 |
Chr8:56545901 |
C |
CT |
1bp_insertion | CDS_variant | 5 | A25,B125,B29,C11,C2 |
Chr8:56545905 |
AT |
A |
1bp_deletion | frameshift_variant | 5 | A25,B125,B29,C11,C2 |
Chr8:56545905 |
AT |
A |
1bp_deletion | CDS_variant | 5 | A25,B125,B29,C11,C2 |
Chr8:56545916 |
T |
TCA |
2bp_insertion | frameshift_variant | 6 | A25,B125,B29,B30,C11,C2 |
Chr8:56545932 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A25,B125,B30,C11,C2 |
Chr8:56546003 |
CG |
C |
1bp_deletion | frameshift_variant | 1 | B49 |
Chr8:56546003 |
CG |
C |
1bp_deletion | CDS_variant | 1 | B49 |
Chr8:56546004 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B24,C67 |
Chr8:56546005 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B49 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057780807.1PF00931
NB-ARC 169-334 aa
PF23559
WHD_DRP 418-489 aa
PF23598
LRR_14 551-840 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057780807.1 |
Pfam | PF00931 |
NB-ARC | Domain | 169 | 334 | 6.6e-43 | 147.0 | NB-ARC domain |
XP_057780807.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 418 | 489 | 2e-20 | 73.3 | Disease resistance protein Winged helix domain |
XP_057780807.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 551 | 840 | 9.8e-14 | 51.6 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。