当前解析结果
SmilChr08G004637| 统一新 Gene ID | SmilChr08G004637 |
|---|---|
| 名称 | SmilChr08G004637 |
| 描述 | putative late blight resistance protein homolog R1A-10 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 55908248 - 55911459 / + |
| NCBI Gene ID | LOC130999310 |
|---|---|
| GeneID | 130999310 |
| locus_tag | - |
| NCBI Name | LOC130999310 |
| 原始查询 | LOC130999310 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1A-10 |
| 产物 | putative late blight resistance protein homolog R1A-10 |
| Arabidopsis | AT3G46530 (RPP13)NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:823806] identity=35.2; qcov=0.569; evalue=1.21e-67; confidence=medium |
| Rice | Os07g0186500- identity=33.1; qcov=0.693; evalue=3.04e-69; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999310 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.40000 | XP_057780808.1 |
| 2 | Cell membrane | 细胞膜 | 0.40000 | XP_057780808.1 |
| 3 | Cytoplasm | 细胞质 | 0.20000 | XP_057780808.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057780808.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057780808.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:55908651 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B1,B131,B138,C34 |
Chr8:55908652 |
ACG |
A |
2bp_deletion | frameshift_variant | 2 | B22,C70 |
Chr8:55908652 |
ACG |
A |
2bp_deletion | CDS_variant | 2 | B22,C70 |
Chr8:55908682 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C56 |
Chr8:55908715 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A9 |
Chr8:55908758 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | A24 |
Chr8:55908758 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A24 |
Chr8:55908813 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B120,B13,C13,C63 |
Chr8:55908896 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B138 |
Chr8:55908945 |
TCG |
T |
2bp_deletion | frameshift_variant | 31 | A15,A3,A6,B1,B106,B123,B134,B138,B139,B2,B23,B29,B31,B39,B51,B60,B71,B76,B89,C10,C16,C27,C43,C53,C58,C61,C62,C70,C78,C83,C87 |
Chr8:55908950 |
A |
AGG |
2bp_insertion | frameshift_variant | 30 | A15,A6,B1,B106,B123,B134,B138,B139,B2,B23,B29,B31,B39,B51,B60,B71,B76,B89,C10,C16,C27,C43,C53,C58,C61,C62,C70,C78,C83,C87 |
Chr8:55908963 |
T |
TAG |
2bp_insertion | frameshift_variant | 2 | C13,C55 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057780808.1PF00931
NB-ARC 155-324 aa
PF23559
WHD_DRP 408-479 aa
PF23598
LRR_14 539-844 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057780808.1 |
Pfam | PF00931 |
NB-ARC | Domain | 155 | 324 | 1.3e-40 | 139.6 | NB-ARC domain |
XP_057780808.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 408 | 479 | 1.2e-18 | 67.7 | Disease resistance protein Winged helix domain |
XP_057780808.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 539 | 844 | 5.1e-13 | 49.2 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。