当前解析结果
SmilChr08G004668| 统一新 Gene ID | SmilChr08G004668 |
|---|---|
| 名称 | SmilChr08G004668 |
| 描述 | alpha-N-acetylglucosaminidase-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 56187649 - 56194284 / - |
| NCBI Gene ID | LOC130999312 |
|---|---|
| GeneID | 130999312 |
| locus_tag | - |
| NCBI Name | LOC130999312 |
| 原始查询 | LOC130999312 |
| 来源 | GFF basic annotation; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | alpha-N-acetylglucosaminidase-like |
| 产物 | alpha-N-acetylglucosaminidase-like |
| Arabidopsis | AT5G13690 (CYL1)alpha-N-acetylglucosaminidase family / NAGLU family [Source:NCBI gene (formerly Entrezgene);Acc:831214] identity=60.3; qcov=0.949; evalue=0; confidence=high |
| Rice | Os04g0650900- identity=81.9; qcov=0.154; evalue=3.45e-71; confidence=weak |
| GO | - |
| KEGG | smil00531 (Glycosaminoglycan degradation - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil04142 (Lysosome biogenesis - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF05089 (NAGLU); PF12971 (NAGLU_N); PF12972 (NAGLU_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999312 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Vacuole | 液泡 | 1.00000 | XP_057780810.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057780810.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057780810.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057780810.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057780810.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:56188013 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B48 |
Chr8:56188032 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A7 |
Chr8:56188077 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B68,C80 |
Chr8:56188242 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr8:56188373 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B68,C80 |
Chr8:56188391 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B1,B41 |
Chr8:56188430 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr8:56188554 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B1,B41 |
Chr8:56188563 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B1,B41 |
Chr8:56188566 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A7 |
Chr8:56188596 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B1,B41 |
Chr8:56188608 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B1,B41 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057780810.1PF12971
NAGLU_N 53-148 aa
PF05089
NAGLU 165-501 aa
PF12972
NAGLU_C 510-809 aa
XP_057780811.1PF12971
NAGLU_N 53-148 aa
PF05089
NAGLU 165-500 aa
PF12972
NAGLU_C 509-808 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057780810.1 |
Pfam | PF12971 |
NAGLU_N | Domain | 53 | 148 | 3.7e-23 | 82.0 | Alpha-N-acetylglucosaminidase (NAGLU) N-terminal domain |
XP_057780810.1 |
Pfam | PF05089 |
NAGLU | Domain | 165 | 501 | 5.4e-141 | 470.1 | Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain |
XP_057780810.1 |
Pfam | PF12972 |
NAGLU_C | Domain | 510 | 809 | 1e-84 | 285.2 | Alpha-N-acetylglucosaminidase (NAGLU) C-terminal domain |
XP_057780811.1 |
Pfam | PF12971 |
NAGLU_N | Domain | 53 | 148 | 3.7e-23 | 82.0 | Alpha-N-acetylglucosaminidase (NAGLU) N-terminal domain |
XP_057780811.1 |
Pfam | PF05089 |
NAGLU | Domain | 165 | 500 | 1.8e-142 | 475.0 | Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain |
XP_057780811.1 |
Pfam | PF12972 |
NAGLU_C | Domain | 509 | 808 | 1e-84 | 285.2 | Alpha-N-acetylglucosaminidase (NAGLU) C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。