Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G004645`

染色体: Chr08 坐标: 55955332-55958575 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G004645`
名称	SmilChr08G004645
描述	uncharacterized SmilChr08G004645
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	55955332 - 55958575 / `+`

ID 对照

NCBI Gene ID	`LOC130999314`
GeneID	`130999314`
locus_tag	`-`
NCBI Name	`LOC130999314`
原始查询	`LOC130999314`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	TTF-type zinc finger protein with HAT dimerization domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:838509]; symbol=AT1G19260; hit=AT1G19260; species=arabidopsis; confidence=high
产物	TTF-type zinc finger protein with HAT dimerization domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:838509]; symbol=AT1G19260; hit=AT1G19260; species=arabidopsis; confidence=high
Arabidopsis	`AT1G19260` (AT1G19260) TTF-type zinc finger protein with HAT dimerization domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:838509] identity=53.4; qcov=0.943; evalue=0; confidence=high
Rice	`Os02g0301400` - identity=39.2; qcov=0.558; evalue=3.47e-98; confidence=medium
GO	GO:0046983 (protein dimerization activity)
KEGG	-
Pfam	PF05699 (Dimer_Tnp_hAT); PF14291 (DUF4371); PF27073 (FAM200-ZBED5_RNase-like)
InterPro	-
eggNOG	-
NR	GeneID:130999314

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057780812.1`
2	Cytoplasm	细胞质	0.20000	`XP_057780812.1`
3	Chromosome	染色体	0.00000	`XP_057780812.1`
4	Centromere	着丝粒	0.00000	`XP_057780812.1`
5	Chromatin	染色质	0.00000	`XP_057780812.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:55956057`	`C`	`T`	EMS_canonical_SNV	stop_gained	10	A3,A9,B26,B29,B40,C16,C20,C21,D2,D8
`Chr8:55956219`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C46
`Chr8:55956999`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B131,B58,B66
`Chr8:55957162`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C2,C44
`Chr8:55957208`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C18,C23,C63
`Chr8:55957273`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B84
`Chr8:55957360`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B100,B53

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780812.1

804 aa

402

804

DUF4371

FAM200-ZBED5_RNase-like

Dimer_Tnp_hAT

PF14291 DUF4371 145-380 aa PF27073 FAM200-ZBED5_RNase-like 281-385 aa PF05699 Dimer_Tnp_hAT 721-779 aa

XP_057780813.1

804 aa

402

804

DUF4371

FAM200-ZBED5_RNase-like

Dimer_Tnp_hAT

PF14291 DUF4371 145-380 aa PF27073 FAM200-ZBED5_RNase-like 281-385 aa PF05699 Dimer_Tnp_hAT 721-779 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057780812.1`	Pfam	`PF14291`	DUF4371	Domain	145	380	5.5e-112	373.8	ZMYM1/FAM200, RNase-like domain
`XP_057780812.1`	Pfam	`PF27073`	FAM200-ZBED5_RNase-like	Domain	281	385	4.7e-08	33.6	FAM200/ZBED5 RNase-like
`XP_057780812.1`	Pfam	`PF05699`	Dimer_Tnp_hAT	Domain	721	779	4.3e-08	33.6	hAT family C-terminal dimerisation region
`XP_057780813.1`	Pfam	`PF14291`	DUF4371	Domain	145	380	5.5e-112	373.8	ZMYM1/FAM200, RNase-like domain
`XP_057780813.1`	Pfam	`PF27073`	FAM200-ZBED5_RNase-like	Domain	281	385	4.7e-08	33.6	FAM200/ZBED5 RNase-like
`XP_057780813.1`	Pfam	`PF05699`	Dimer_Tnp_hAT	Domain	721	779	4.3e-08	33.6	hAT family C-terminal dimerisation region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057924829.1
TCATTTTCGCAGCCCTCACAACCTAACCTCTGAAACTCCTCCCCTTCTCCATTGCGCAGCTGCGCCGCTTTCCAACTTCCAGGTGCCGCGCCGCTTTCCAACTTCTCTACCGGCTGCTGCCAGCCTGCCCCTGTCGACGCCGTCGCCGGCAATTTCTCTCCGTCGACAGCAATCTCTCTCCGGTGCGTCGTCTCTCTCCGGAAGTAGCTGAAAATGAAACGATATTATAATCACATAGTTACTACAAGTGGGGCGGGTTC...

XM_057924830.1
TCATTTTCGCAGCCCTCACAACCTAACCTCTGAAACTCCTCCCCTTCTCCATTGCGCAGCTGCGCCGCTTTCCAACTTCCAGGTGCCGCGCCGCTTTCCAACTTCTCTACCGGCTGCTGCCAGCCTGCCCCTGTCGACGCCGTCGCCGGCAATTTCTCTCCGTCGACAGCAATCTCTCTCCGGAAGTAGCTGAAAATGAAACGATATTATAATCACATAGTTACTACAAGTGGGGCGGGTTCATCTTCAACGATTAATGG...

CDS

2 records

下载 CDS FASTA

LOC130999314
ATGAAACGATATTATAATCACATAGTTACTACAAGTGGGGCGGGTTCATCTTCAACGATTAATGGTCCTAATGCACGTGTGGAACCTGAAGCATCACCAAAAGAAGTGAATATTGAAGTTGATCTTCAGCTTGAGCCATCTTCGAAAGTGGTTGATTTATTAAATCTTCCAAGTGATCCGGGACTACGGCCTAACATAATGAGCTATCCTCCAAACATGATTGAGCAGGTGCGTAGAGCTTATTTATTAAAAGGTCCATG...

Protein

2 records

下载 Protein FASTA

XP_057780812.1
MKRYYNHIVTTSGAGSSSTINGPNARVEPEASPKEVNIEVDLQLEPSSKVVDLLNLPSDPGLRPNIMSYPPNMIEQVRRAYLLKGPCQPRNHDFPQKIEANRKRKFVSAWFDEFKMWLEYNIAKDAAFCLYCYLFSSGSSEKGHDAFISGGFNTWRKKDRLRDHVGEVNSDHNKCRLACQDLMNQAQHIEVTISRVSKQSQMDYRSRLDASIKCLRYLLMQGMAFRGHDESEESLNQGNFMELLKLLASCSKEISNVVLK...

XP_057780813.1
MKRYYNHIVTTSGAGSSSTINGPNARVEPEASPKEVNIEVDLQLEPSSKVVDLLNLPSDPGLRPNIMSYPPNMIEQVRRAYLLKGPCQPRNHDFPQKIEANRKRKFVSAWFDEFKMWLEYNIAKDAAFCLYCYLFSSGSSEKGHDAFISGGFNTWRKKDRLRDHVGEVNSDHNKCRLACQDLMNQAQHIEVTISRVSKQSQMDYRSRLDASIKCLRYLLMQGMAFRGHDESEESLNQGNFMELLKLLASCSKEISNVVLK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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