当前解析结果
SmilChr08G004708| 统一新 Gene ID | SmilChr08G004708 |
|---|---|
| 名称 | SmilChr08G004708 |
| 描述 | putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 56517028 - 56540114 / - |
| NCBI Gene ID | LOC130999319 |
|---|---|
| GeneID | 130999319 |
| locus_tag | - |
| NCBI Name | LOC130999319 |
| 原始查询 | LOC130999319 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial |
| 产物 | putative pentatricopeptide repeat-containing protein At1g12700%2C mitochondrial |
| Arabidopsis | AT1G62670 (RPF2)rna processing factor 2 [Source:NCBI gene (formerly Entrezgene);Acc:842564] identity=34.8; qcov=0.986; evalue=3.76e-130; confidence=low |
| Rice | Os08g0107800- identity=33.3; qcov=0.854; evalue=1.27e-101; confidence=low |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999319 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 0.80000 | XP_057780818.1 |
| 2 | Chloroplast | 叶绿体 | 0.40000 | XP_057780819.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057780818.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057780818.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057780818.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:56537785 |
AAT |
A |
2bp_deletion | frameshift_variant | 1 | B104 |
Chr8:56537785 |
AAT |
A |
2bp_deletion | CDS_variant | 1 | B104 |
Chr8:56537797 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C53,C83 |
Chr8:56537880 |
GA |
G |
1bp_deletion | frameshift_variant | 1 | C85 |
Chr8:56537880 |
GA |
G |
1bp_deletion | CDS_variant | 1 | C85 |
Chr8:56537895 |
TC |
T |
1bp_deletion | frameshift_variant | 6 | B37,B71,B81,B89,C62,C9 |
Chr8:56537898 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B122,B2,B23,C62,C9 |
Chr8:56537907 |
C |
T |
EMS_canonical_SNV | stop_gained | 6 | B37,B42,B43,C62,C82,C9 |
Chr8:56537947 |
G |
A |
EMS_canonical_SNV | stop_gained | 4 | B101,B99,C67,C87 |
Chr8:56537947 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B101,B99,C67,C87 |
Chr8:56538227 |
CA |
C |
1bp_deletion | frameshift_variant | 1 | B14 |
Chr8:56538227 |
CA |
C |
1bp_deletion | CDS_variant | 1 | B14 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057780818.1PF13041
PPR_2 83-132 aa
PF01535
PPR 88-114 aa
PF13041
PPR_2 153-203 aa
PF12854
PPR_1 187-214 aa
PF13041
PPR_2 189-240 aa
PF01535
PPR 192-218 aa
PF12854
PPR_1 224-252 aa
PF13812
PPR_3 225-271 aa
PF13041
PPR_2 226-275 aa
PF23276
TPR_24 229-318 aa
PF01535
PPR 230-259 aa
PF13812
PPR_3 251-305 aa
PF12854
PPR_1 257-289 aa
PF01535
PPR 264-290 aa
PF13041
PPR_2 264-307 aa
PF12854
PPR_1 294-325 aa
PF13041
PPR_2 296-344 aa
PF01535
PPR 299-327 aa
PF13812
PPR_3 323-379 aa
PF12854
PPR_1 329-356 aa
PF13041
PPR_2 331-380 aa
PF01535
PPR 334-363 aa
PF12854
PPR_1 363-386 aa
PF01535
PPR 369-393 aa
PF13812
PPR_3 396-446 aa
PF12854
PPR_1 399-430 aa
PF13041
PPR_2 401-449 aa
PF01535
PPR 404-431 aa
PF17177
PPR_long 419-546 aa
PF12854
PPR_1 434-465 aa
PF01535
PPR 440-469 aa
PF23276
TPR_24 441-532 aa
PF13041
PPR_2 445-485 aa
PF13812
PPR_3 459-521 aa
PF12854
PPR_1 467-498 aa
PF01535
PPR 474-504 aa
PF13041
PPR_2 478-518 aa
PF12854
PPR_1 502-533 aa
PF13041
PPR_2 506-555 aa
PF01535
PPR 509-539 aa
PF13812
PPR_3 530-567 aa
PF12854
PPR_1 537-568 aa
PF13041
PPR_2 541-589 aa
PF01535
PPR 544-574 aa
PF13812
PPR_3 565-619 aa
PF12854
PPR_1 572-605 aa
PF13041
PPR_2 576-614 aa
PF01535
PPR 579-609 aa
PF13041
PPR_2 611-656 aa
PF01535
PPR 614-644 aa
XP_057780819.1PF13041
PPR_2 83-132 aa
PF01535
PPR 88-114 aa
PF13041
PPR_2 153-203 aa
PF12854
PPR_1 187-214 aa
PF13041
PPR_2 189-240 aa
PF01535
PPR 192-218 aa
PF12854
PPR_1 224-252 aa
PF13812
PPR_3 225-271 aa
PF13041
PPR_2 226-275 aa
PF23276
TPR_24 229-318 aa
PF01535
PPR 230-259 aa
PF13812
PPR_3 251-305 aa
PF12854
PPR_1 257-289 aa
PF13041
PPR_2 263-310 aa
PF01535
PPR 264-290 aa
PF12854
PPR_1 294-325 aa
PF13041
PPR_2 296-344 aa
PF01535
PPR 299-327 aa
PF13812
PPR_3 323-379 aa
PF12854
PPR_1 329-356 aa
PF13041
PPR_2 331-371 aa
PF01535
PPR 334-363 aa
PF12854
PPR_1 363-386 aa
PF13041
PPR_2 366-393 aa
PF01535
PPR 369-393 aa
PF13812
PPR_3 396-446 aa
PF12854
PPR_1 399-430 aa
PF13041
PPR_2 401-449 aa
PF01535
PPR 404-431 aa
PF12854
PPR_1 434-465 aa
PF01535
PPR 440-469 aa
PF23276
TPR_24 441-532 aa
PF13041
PPR_2 445-485 aa
PF13812
PPR_3 459-521 aa
PF12854
PPR_1 467-498 aa
PF01535
PPR 474-504 aa
PF13041
PPR_2 479-518 aa
PF17177
PPR_long 489-626 aa
PF12854
PPR_1 502-533 aa
PF13041
PPR_2 506-555 aa
PF01535
PPR 509-539 aa
PF13812
PPR_3 530-588 aa
PF12854
PPR_1 537-568 aa
PF13041
PPR_2 542-589 aa
PF01535
PPR 544-574 aa
PF12854
PPR_1 572-605 aa
PF01535
PPR 579-605 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057780818.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 83 | 132 | 2.5e-183 | 594.9 | PPR repeat family |
XP_057780818.1 |
Pfam | PF01535 |
PPR | Repeat | 88 | 114 | 7e-114 | 365.2 | PPR repeat |
XP_057780818.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 153 | 203 | 2.5e-183 | 594.9 | PPR repeat family |
XP_057780818.1 |
Pfam | PF12854 |
PPR_1 | Repeat | 187 | 214 | 5.3e-155 | 503.5 | PPR repeat |
XP_057780818.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 189 | 240 | 2.5e-183 | 594.9 | PPR repeat family |
XP_057780818.1 |
Pfam | PF01535 |
PPR | Repeat | 192 | 218 | 7e-114 | 365.2 | PPR repeat |
XP_057780818.1 |
Pfam | PF12854 |
PPR_1 | Repeat | 224 | 252 | 5.3e-155 | 503.5 | PPR repeat |
XP_057780818.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 225 | 271 | 6.3e-75 | 247.9 | Pentatricopeptide repeat domain |
XP_057780818.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 226 | 275 | 2.5e-183 | 594.9 | PPR repeat family |
XP_057780818.1 |
Pfam | PF23276 |
TPR_24 | Repeat | 229 | 318 | 3.4e-38 | 131.3 | Pentatricopeptide repeat-containing protein |
XP_057780818.1 |
Pfam | PF01535 |
PPR | Repeat | 230 | 259 | 7e-114 | 365.2 | PPR repeat |
XP_057780818.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 251 | 305 | 6.3e-75 | 247.9 | Pentatricopeptide repeat domain |
XP_057780818.1 |
Pfam | PF12854 |
PPR_1 | Repeat | 257 | 289 | 5.3e-155 | 503.5 | PPR repeat |
XP_057780818.1 |
Pfam | PF01535 |
PPR | Repeat | 264 | 290 | 7e-114 | 365.2 | PPR repeat |
XP_057780818.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 264 | 307 | 2.5e-183 | 594.9 | PPR repeat family |
XP_057780818.1 |
Pfam | PF12854 |
PPR_1 | Repeat | 294 | 325 | 5.3e-155 | 503.5 | PPR repeat |
XP_057780818.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 296 | 344 | 2.5e-183 | 594.9 | PPR repeat family |
XP_057780818.1 |
Pfam | PF01535 |
PPR | Repeat | 299 | 327 | 7e-114 | 365.2 | PPR repeat |
XP_057780818.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 323 | 379 | 6.3e-75 | 247.9 | Pentatricopeptide repeat domain |
XP_057780818.1 |
Pfam | PF12854 |
PPR_1 | Repeat | 329 | 356 | 5.3e-155 | 503.5 | PPR repeat |
XP_057780818.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 331 | 380 | 2.5e-183 | 594.9 | PPR repeat family |
XP_057780818.1 |
Pfam | PF01535 |
PPR | Repeat | 334 | 363 | 7e-114 | 365.2 | PPR repeat |
XP_057780818.1 |
Pfam | PF12854 |
PPR_1 | Repeat | 363 | 386 | 5.3e-155 | 503.5 | PPR repeat |
XP_057780818.1 |
Pfam | PF01535 |
PPR | Repeat | 369 | 393 | 7e-114 | 365.2 | PPR repeat |
XP_057780818.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 396 | 446 | 6.3e-75 | 247.9 | Pentatricopeptide repeat domain |
XP_057780818.1 |
Pfam | PF12854 |
PPR_1 | Repeat | 399 | 430 | 5.3e-155 | 503.5 | PPR repeat |
XP_057780818.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 401 | 449 | 2.5e-183 | 594.9 | PPR repeat family |
XP_057780818.1 |
Pfam | PF01535 |
PPR | Repeat | 404 | 431 | 7e-114 | 365.2 | PPR repeat |
XP_057780818.1 |
Pfam | PF17177 |
PPR_long | Repeat | 419 | 546 | 1.8e-29 | 103.3 | Pentacotripeptide-repeat region of PRORP |
XP_057780818.1 |
Pfam | PF12854 |
PPR_1 | Repeat | 434 | 465 | 5.3e-155 | 503.5 | PPR repeat |
XP_057780818.1 |
Pfam | PF01535 |
PPR | Repeat | 440 | 469 | 7e-114 | 365.2 | PPR repeat |
XP_057780818.1 |
Pfam | PF23276 |
TPR_24 | Repeat | 441 | 532 | 3.4e-38 | 131.3 | Pentatricopeptide repeat-containing protein |
XP_057780818.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 445 | 485 | 2.5e-183 | 594.9 | PPR repeat family |
XP_057780818.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 459 | 521 | 6.3e-75 | 247.9 | Pentatricopeptide repeat domain |
XP_057780818.1 |
Pfam | PF12854 |
PPR_1 | Repeat | 467 | 498 | 5.3e-155 | 503.5 | PPR repeat |
XP_057780818.1 |
Pfam | PF01535 |
PPR | Repeat | 474 | 504 | 7e-114 | 365.2 | PPR repeat |
XP_057780818.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 478 | 518 | 2.5e-183 | 594.9 | PPR repeat family |
XP_057780818.1 |
Pfam | PF12854 |
PPR_1 | Repeat | 502 | 533 | 5.3e-155 | 503.5 | PPR repeat |
XP_057780818.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 506 | 555 | 2.5e-183 | 594.9 | PPR repeat family |
XP_057780818.1 |
Pfam | PF01535 |
PPR | Repeat | 509 | 539 | 7e-114 | 365.2 | PPR repeat |
XP_057780818.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 530 | 567 | 6.3e-75 | 247.9 | Pentatricopeptide repeat domain |
XP_057780818.1 |
Pfam | PF12854 |
PPR_1 | Repeat | 537 | 568 | 5.3e-155 | 503.5 | PPR repeat |
XP_057780818.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 541 | 589 | 2.5e-183 | 594.9 | PPR repeat family |
XP_057780818.1 |
Pfam | PF01535 |
PPR | Repeat | 544 | 574 | 7e-114 | 365.2 | PPR repeat |
XP_057780818.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 565 | 619 | 6.3e-75 | 247.9 | Pentatricopeptide repeat domain |
XP_057780818.1 |
Pfam | PF12854 |
PPR_1 | Repeat | 572 | 605 | 5.3e-155 | 503.5 | PPR repeat |
XP_057780818.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 576 | 614 | 2.5e-183 | 594.9 | PPR repeat family |
XP_057780818.1 |
Pfam | PF01535 |
PPR | Repeat | 579 | 609 | 7e-114 | 365.2 | PPR repeat |
XP_057780818.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 611 | 656 | 2.5e-183 | 594.9 | PPR repeat family |
XP_057780818.1 |
Pfam | PF01535 |
PPR | Repeat | 614 | 644 | 7e-114 | 365.2 | PPR repeat |
XP_057780819.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 83 | 132 | 7.1e-167 | 542.2 | PPR repeat family |
XP_057780819.1 |
Pfam | PF01535 |
PPR | Repeat | 88 | 114 | 5.4e-107 | 343.6 | PPR repeat |
XP_057780819.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 153 | 203 | 7.1e-167 | 542.2 | PPR repeat family |
XP_057780819.1 |
Pfam | PF12854 |
PPR_1 | Repeat | 187 | 214 | 4.3e-149 | 484.6 | PPR repeat |
XP_057780819.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 189 | 240 | 7.1e-167 | 542.2 | PPR repeat family |
XP_057780819.1 |
Pfam | PF01535 |
PPR | Repeat | 192 | 218 | 5.4e-107 | 343.6 | PPR repeat |
XP_057780819.1 |
Pfam | PF12854 |
PPR_1 | Repeat | 224 | 252 | 4.3e-149 | 484.6 | PPR repeat |
XP_057780819.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 225 | 271 | 3.8e-68 | 226.2 | Pentatricopeptide repeat domain |
XP_057780819.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 226 | 275 | 7.1e-167 | 542.2 | PPR repeat family |
XP_057780819.1 |
Pfam | PF23276 |
TPR_24 | Repeat | 229 | 318 | 9.7e-35 | 120.1 | Pentatricopeptide repeat-containing protein |
XP_057780819.1 |
Pfam | PF01535 |
PPR | Repeat | 230 | 259 | 5.4e-107 | 343.6 | PPR repeat |
XP_057780819.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 251 | 305 | 3.8e-68 | 226.2 | Pentatricopeptide repeat domain |
XP_057780819.1 |
Pfam | PF12854 |
PPR_1 | Repeat | 257 | 289 | 4.3e-149 | 484.6 | PPR repeat |
XP_057780819.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 263 | 310 | 7.1e-167 | 542.2 | PPR repeat family |
XP_057780819.1 |
Pfam | PF01535 |
PPR | Repeat | 264 | 290 | 5.4e-107 | 343.6 | PPR repeat |
XP_057780819.1 |
Pfam | PF12854 |
PPR_1 | Repeat | 294 | 325 | 4.3e-149 | 484.6 | PPR repeat |
XP_057780819.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 296 | 344 | 7.1e-167 | 542.2 | PPR repeat family |
XP_057780819.1 |
Pfam | PF01535 |
PPR | Repeat | 299 | 327 | 5.4e-107 | 343.6 | PPR repeat |
XP_057780819.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 323 | 379 | 3.8e-68 | 226.2 | Pentatricopeptide repeat domain |
XP_057780819.1 |
Pfam | PF12854 |
PPR_1 | Repeat | 329 | 356 | 4.3e-149 | 484.6 | PPR repeat |
XP_057780819.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 331 | 371 | 7.1e-167 | 542.2 | PPR repeat family |
XP_057780819.1 |
Pfam | PF01535 |
PPR | Repeat | 334 | 363 | 5.4e-107 | 343.6 | PPR repeat |
XP_057780819.1 |
Pfam | PF12854 |
PPR_1 | Repeat | 363 | 386 | 4.3e-149 | 484.6 | PPR repeat |
XP_057780819.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 366 | 393 | 7.1e-167 | 542.2 | PPR repeat family |
XP_057780819.1 |
Pfam | PF01535 |
PPR | Repeat | 369 | 393 | 5.4e-107 | 343.6 | PPR repeat |
XP_057780819.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 396 | 446 | 3.8e-68 | 226.2 | Pentatricopeptide repeat domain |
XP_057780819.1 |
Pfam | PF12854 |
PPR_1 | Repeat | 399 | 430 | 4.3e-149 | 484.6 | PPR repeat |
XP_057780819.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 401 | 449 | 7.1e-167 | 542.2 | PPR repeat family |
XP_057780819.1 |
Pfam | PF01535 |
PPR | Repeat | 404 | 431 | 5.4e-107 | 343.6 | PPR repeat |
XP_057780819.1 |
Pfam | PF12854 |
PPR_1 | Repeat | 434 | 465 | 4.3e-149 | 484.6 | PPR repeat |
XP_057780819.1 |
Pfam | PF01535 |
PPR | Repeat | 440 | 469 | 5.4e-107 | 343.6 | PPR repeat |
XP_057780819.1 |
Pfam | PF23276 |
TPR_24 | Repeat | 441 | 532 | 9.7e-35 | 120.1 | Pentatricopeptide repeat-containing protein |
XP_057780819.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 445 | 485 | 7.1e-167 | 542.2 | PPR repeat family |
XP_057780819.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 459 | 521 | 3.8e-68 | 226.2 | Pentatricopeptide repeat domain |
XP_057780819.1 |
Pfam | PF12854 |
PPR_1 | Repeat | 467 | 498 | 4.3e-149 | 484.6 | PPR repeat |
XP_057780819.1 |
Pfam | PF01535 |
PPR | Repeat | 474 | 504 | 5.4e-107 | 343.6 | PPR repeat |
XP_057780819.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 479 | 518 | 7.1e-167 | 542.2 | PPR repeat family |
XP_057780819.1 |
Pfam | PF17177 |
PPR_long | Repeat | 489 | 626 | 6.9e-29 | 101.5 | Pentacotripeptide-repeat region of PRORP |
XP_057780819.1 |
Pfam | PF12854 |
PPR_1 | Repeat | 502 | 533 | 4.3e-149 | 484.6 | PPR repeat |
XP_057780819.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 506 | 555 | 7.1e-167 | 542.2 | PPR repeat family |
XP_057780819.1 |
Pfam | PF01535 |
PPR | Repeat | 509 | 539 | 5.4e-107 | 343.6 | PPR repeat |
XP_057780819.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 530 | 588 | 3.8e-68 | 226.2 | Pentatricopeptide repeat domain |
XP_057780819.1 |
Pfam | PF12854 |
PPR_1 | Repeat | 537 | 568 | 4.3e-149 | 484.6 | PPR repeat |
XP_057780819.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 542 | 589 | 7.1e-167 | 542.2 | PPR repeat family |
XP_057780819.1 |
Pfam | PF01535 |
PPR | Repeat | 544 | 574 | 5.4e-107 | 343.6 | PPR repeat |
XP_057780819.1 |
Pfam | PF12854 |
PPR_1 | Repeat | 572 | 605 | 4.3e-149 | 484.6 | PPR repeat |
XP_057780819.1 |
Pfam | PF01535 |
PPR | Repeat | 579 | 605 | 5.4e-107 | 343.6 | PPR repeat |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。