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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G004727

染色体: Chr08 坐标: 56653815-56657172 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G004727
名称SmilChr08G004727
描述pentatricopeptide repeat-containing protein At1g63330-like
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向56653815 - 56657172 / +

ID 对照

NCBI Gene IDLOC130999325
GeneID130999325
locus_tag-
NCBI NameLOC130999325
原始查询LOC130999325

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At1g63330-like
产物pentatricopeptide repeat-containing protein At1g63330-like
ArabidopsisAT1G62670 (RPF2)
rna processing factor 2 [Source:NCBI gene (formerly Entrezgene);Acc:842564]
identity=34.7; qcov=0.963; evalue=1.44e-129; confidence=low
RiceOs10g0495200 (Rf4)
-
identity=33.7; qcov=0.808; evalue=5.99e-103; confidence=low
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:130999325

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 0.80000 XP_057780823.1
2 Chloroplast 叶绿体 0.20000 XP_057780823.1
3 Nucleus 细胞核 0.00000 XP_057780823.1
4 Chromosome 染色体 0.00000 XP_057780823.1
5 Centromere 着丝粒 0.00000 XP_057780823.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:56654009 C T EMS_canonical_SNV CDS_variant 1 B34
Chr8:56654037 C T EMS_canonical_SNV CDS_variant 1 D11
Chr8:56654064 C T EMS_canonical_SNV CDS_variant 4 B138,B4,B70,C62
Chr8:56654143 C T EMS_canonical_SNV CDS_variant 1 C69
Chr8:56654174 G A EMS_canonical_SNV CDS_variant 1 C87
Chr8:56654178 C T EMS_canonical_SNV CDS_variant 2 C80,C87
Chr8:56654188 C T EMS_canonical_SNV CDS_variant 4 B104,B140,B33,B4
Chr8:56654230 T TTC 2bp_insertion frameshift_variant 1 B127
Chr8:56654230 T TTC 2bp_insertion CDS_variant 1 B127
Chr8:56654245 C CA 1bp_insertion frameshift_variant 1 B102
Chr8:56654245 C CA 1bp_insertion CDS_variant 1 B102
Chr8:56654413 C T EMS_canonical_SNV CDS_variant 5 B136,B138,B77,C53,C78

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780823.1
650 aa
N
1
325
650
PPR_2
PPR_3
PPR
PPR_1
PPR_2
PPR
PPR_1
PPR_3
PPR_2
TPR_24
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_2
PPR
PPR_1
PPR
PPR_2
TPR_24
PPR_3
PPR_1
PPR
PPR_2
PPR_2
PPR
PPR_3
TPR_24
PPR_1
PPR
PPR_2
PPR_3
PPR_1
PPR
PPR_2
PPR_1
PPR
C
PF13041 PPR_2 119-165 aa PF13812 PPR_3 148-199 aa PF01535 PPR 156-180 aa PF12854 PPR_1 187-214 aa PF13041 PPR_2 189-240 aa PF01535 PPR 192-218 aa PF12854 PPR_1 224-252 aa PF13812 PPR_3 225-271 aa PF13041 PPR_2 226-275 aa PF23276 TPR_24 228-318 aa PF01535 PPR 230-259 aa PF12854 PPR_1 257-289 aa PF13041 PPR_2 261-310 aa PF01535 PPR 264-291 aa PF13812 PPR_3 285-342 aa PF12854 PPR_1 293-325 aa PF13041 PPR_2 296-344 aa PF01535 PPR 300-327 aa PF13812 PPR_3 324-378 aa PF12854 PPR_1 329-356 aa PF13041 PPR_2 331-380 aa PF01535 PPR 334-363 aa PF12854 PPR_1 363-391 aa PF13041 PPR_2 366-413 aa PF01535 PPR 369-391 aa PF13812 PPR_3 396-446 aa PF13041 PPR_2 401-449 aa PF01535 PPR 404-431 aa PF12854 PPR_1 434-465 aa PF01535 PPR 440-469 aa PF13041 PPR_2 440-485 aa PF23276 TPR_24 441-532 aa PF13812 PPR_3 459-521 aa PF12854 PPR_1 467-498 aa PF01535 PPR 474-504 aa PF13041 PPR_2 479-518 aa PF13041 PPR_2 506-555 aa PF01535 PPR 512-539 aa PF13812 PPR_3 530-587 aa PF23276 TPR_24 536-636 aa PF12854 PPR_1 537-568 aa PF01535 PPR 544-574 aa PF13041 PPR_2 548-589 aa PF13812 PPR_3 565-619 aa PF12854 PPR_1 572-605 aa PF01535 PPR 579-609 aa PF13041 PPR_2 583-625 aa PF12854 PPR_1 607-639 aa PF01535 PPR 614-644 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057780823.1 Pfam PF13041 PPR_2 Repeat 119 165 3e-178 578.6 PPR repeat family
XP_057780823.1 Pfam PF13812 PPR_3 Repeat 148 199 4.8e-71 235.5 Pentatricopeptide repeat domain
XP_057780823.1 Pfam PF01535 PPR Repeat 156 180 2.1e-108 348.0 PPR repeat
XP_057780823.1 Pfam PF12854 PPR_1 Repeat 187 214 4.3e-154 500.6 PPR repeat
XP_057780823.1 Pfam PF13041 PPR_2 Repeat 189 240 3e-178 578.6 PPR repeat family
XP_057780823.1 Pfam PF01535 PPR Repeat 192 218 2.1e-108 348.0 PPR repeat
XP_057780823.1 Pfam PF12854 PPR_1 Repeat 224 252 4.3e-154 500.6 PPR repeat
XP_057780823.1 Pfam PF13812 PPR_3 Repeat 225 271 4.8e-71 235.5 Pentatricopeptide repeat domain
XP_057780823.1 Pfam PF13041 PPR_2 Repeat 226 275 3e-178 578.6 PPR repeat family
XP_057780823.1 Pfam PF23276 TPR_24 Repeat 228 318 5.8e-38 130.5 Pentatricopeptide repeat-containing protein
XP_057780823.1 Pfam PF01535 PPR Repeat 230 259 2.1e-108 348.0 PPR repeat
XP_057780823.1 Pfam PF12854 PPR_1 Repeat 257 289 4.3e-154 500.6 PPR repeat
XP_057780823.1 Pfam PF13041 PPR_2 Repeat 261 310 3e-178 578.6 PPR repeat family
XP_057780823.1 Pfam PF01535 PPR Repeat 264 291 2.1e-108 348.0 PPR repeat
XP_057780823.1 Pfam PF13812 PPR_3 Repeat 285 342 4.8e-71 235.5 Pentatricopeptide repeat domain
XP_057780823.1 Pfam PF12854 PPR_1 Repeat 293 325 4.3e-154 500.6 PPR repeat
XP_057780823.1 Pfam PF13041 PPR_2 Repeat 296 344 3e-178 578.6 PPR repeat family
XP_057780823.1 Pfam PF01535 PPR Repeat 300 327 2.1e-108 348.0 PPR repeat
XP_057780823.1 Pfam PF13812 PPR_3 Repeat 324 378 4.8e-71 235.5 Pentatricopeptide repeat domain
XP_057780823.1 Pfam PF12854 PPR_1 Repeat 329 356 4.3e-154 500.6 PPR repeat
XP_057780823.1 Pfam PF13041 PPR_2 Repeat 331 380 3e-178 578.6 PPR repeat family
XP_057780823.1 Pfam PF01535 PPR Repeat 334 363 2.1e-108 348.0 PPR repeat
XP_057780823.1 Pfam PF12854 PPR_1 Repeat 363 391 4.3e-154 500.6 PPR repeat
XP_057780823.1 Pfam PF13041 PPR_2 Repeat 366 413 3e-178 578.6 PPR repeat family
XP_057780823.1 Pfam PF01535 PPR Repeat 369 391 2.1e-108 348.0 PPR repeat
XP_057780823.1 Pfam PF13812 PPR_3 Repeat 396 446 4.8e-71 235.5 Pentatricopeptide repeat domain
XP_057780823.1 Pfam PF13041 PPR_2 Repeat 401 449 3e-178 578.6 PPR repeat family
XP_057780823.1 Pfam PF01535 PPR Repeat 404 431 2.1e-108 348.0 PPR repeat
XP_057780823.1 Pfam PF12854 PPR_1 Repeat 434 465 4.3e-154 500.6 PPR repeat
XP_057780823.1 Pfam PF01535 PPR Repeat 440 469 2.1e-108 348.0 PPR repeat
XP_057780823.1 Pfam PF13041 PPR_2 Repeat 440 485 3e-178 578.6 PPR repeat family
XP_057780823.1 Pfam PF23276 TPR_24 Repeat 441 532 5.8e-38 130.5 Pentatricopeptide repeat-containing protein
XP_057780823.1 Pfam PF13812 PPR_3 Repeat 459 521 4.8e-71 235.5 Pentatricopeptide repeat domain
XP_057780823.1 Pfam PF12854 PPR_1 Repeat 467 498 4.3e-154 500.6 PPR repeat
XP_057780823.1 Pfam PF01535 PPR Repeat 474 504 2.1e-108 348.0 PPR repeat
XP_057780823.1 Pfam PF13041 PPR_2 Repeat 479 518 3e-178 578.6 PPR repeat family
XP_057780823.1 Pfam PF13041 PPR_2 Repeat 506 555 3e-178 578.6 PPR repeat family
XP_057780823.1 Pfam PF01535 PPR Repeat 512 539 2.1e-108 348.0 PPR repeat
XP_057780823.1 Pfam PF13812 PPR_3 Repeat 530 587 4.8e-71 235.5 Pentatricopeptide repeat domain
XP_057780823.1 Pfam PF23276 TPR_24 Repeat 536 636 5.8e-38 130.5 Pentatricopeptide repeat-containing protein
XP_057780823.1 Pfam PF12854 PPR_1 Repeat 537 568 4.3e-154 500.6 PPR repeat
XP_057780823.1 Pfam PF01535 PPR Repeat 544 574 2.1e-108 348.0 PPR repeat
XP_057780823.1 Pfam PF13041 PPR_2 Repeat 548 589 3e-178 578.6 PPR repeat family
XP_057780823.1 Pfam PF13812 PPR_3 Repeat 565 619 4.8e-71 235.5 Pentatricopeptide repeat domain
XP_057780823.1 Pfam PF12854 PPR_1 Repeat 572 605 4.3e-154 500.6 PPR repeat
XP_057780823.1 Pfam PF01535 PPR Repeat 579 609 2.1e-108 348.0 PPR repeat
XP_057780823.1 Pfam PF13041 PPR_2 Repeat 583 625 3e-178 578.6 PPR repeat family
XP_057780823.1 Pfam PF12854 PPR_1 Repeat 607 639 4.3e-154 500.6 PPR repeat
XP_057780823.1 Pfam PF01535 PPR Repeat 614 644 2.1e-108 348.0 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XR_009093470.1
ATATAACCAGATCTACTTTACCCTTCTTCCCCAGCTAGCACTTCCAATTCCCCAAATCTCGTTTTTTACCTTTCTCACAAAACCCTATCTCTCCTTCTTCAACAGCGAGCTTCCCCAATTCTTCAGCTTTTAATTTCAGTGGTCACAACTACAAAACTATCCCAAGAATGAGGTCTAACCACGCCGCCATGTTTCTCGGTAGAATTTTGTCGAATTCTTCATCTAAATTCTCCACTTTTGCCATCACTTCTCCACATTAT...
XM_057924840.1
ATATAACCAGATCTACTTTACCCTTCTTCCCCAGCTAGCACTTCCAATTCCCCAAATCTCGTTTTTTACCTTTCTCACAAAACCCTATCTCTCCTTCTTCAACAGCGAGCTTCCCCAATTCTTCAGCTTTTAATTTCAGTGGTCACAACTACAAAACTATCCCAAGAATGAGGTCTAACCACGCCGCCATGTTTCTCGGTAGAATTTTGTCGAATTCTTCATCTAAATTCTCCACTTTTGCCATCACTTCTCCACATTAT...

CDS

1 records

下载 CDS FASTA
LOC130999325
ATGAGGTCTAACCACGCCGCCATGTTTCTCGGTAGAATTTTGTCGAATTCTTCATCTAAATTCTCCACTTTTGCCATCACTTCTCCACATTATCAATCATTTCTTCTACCCAGTTTTCATTTTGATAATGCCAGCTGCCAAATGAGGAGACACTTCTCCGCCTATCCCAGATTCGATTTTGAATCTATACGTGAACCCAATGATGCCGTCGCTCTATTTCAGGATATGATGAGAACGGAGCCGCTTCCTTATGCTTCTGT...

Protein

1 records

下载 Protein FASTA
XP_057780823.1
MRSNHAAMFLGRILSNSSSKFSTFAITSPHYQSFLLPSFHFDNASCQMRRHFSAYPRFDFESIREPNDAVALFQDMMRTEPLPYASVFTKLLSTVVKLKQYSLALHLIDEMLQRHVPVNQYILNIAIDCYCRQKRPDCGFAILGSFFKRGFEPTVVTFTTLLKGLLLVGRIPEAAKLLGKLSAYQLCEPDEYTYNTIINGLCKAGDILQAIDLLCSLEKGKGSCKPNVYAYNAVIDGLCKEGKVDDALQLFSSLGDKGIS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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