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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G004602

染色体: Chr08 坐标: 55599973-55604233 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G004602
名称SmilChr08G004602
描述putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向55599973 - 55604233 / -

ID 对照

NCBI Gene IDLOC130999326
GeneID130999326
locus_tag-
NCBI NameLOC130999326
原始查询LOC130999326

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial
产物putative pentatricopeptide repeat-containing protein At1g12700%2C mitochondrial
ArabidopsisAT1G62670 (RPF2)
rna processing factor 2 [Source:NCBI gene (formerly Entrezgene);Acc:842564]
identity=33.3; qcov=0.972; evalue=3.26e-127; confidence=low
RiceOs08g0107800
-
identity=33.6; qcov=0.881; evalue=1.09e-103; confidence=low
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:130999326

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 0.80000 XP_057780824.1
2 Chloroplast 叶绿体 0.20000 XP_057780824.1
3 Nucleus 细胞核 0.00000 XP_057780824.1
4 Chromosome 染色体 0.00000 XP_057780824.1
5 Centromere 着丝粒 0.00000 XP_057780824.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:55602163 AAT A 2bp_deletion frameshift_variant 1 B19
Chr8:55602163 AAT A 2bp_deletion CDS_variant 1 B19
Chr8:55602175 G A EMS_canonical_SNV CDS_variant 2 C53,C83
Chr8:55602293 C T EMS_canonical_SNV CDS_variant 1 B91
Chr8:55602371 G A EMS_canonical_SNV CDS_variant 3 B124,B72,B79
Chr8:55602375 G A EMS_canonical_SNV CDS_variant 2 B19,B85
Chr8:55602407 C T EMS_canonical_SNV CDS_variant 1 B38
Chr8:55602419 C T EMS_canonical_SNV CDS_variant 1 B54
Chr8:55602473 C CGG 2bp_insertion frameshift_variant 7 B2,B23,B3,B43,B45,B5,C64
Chr8:55602540 G A EMS_canonical_SNV CDS_variant 5 A14,B14,B55,C16,C34
Chr8:55602690 C CA 1bp_insertion frameshift_variant 2 B11,C30
Chr8:55602690 C CA 1bp_insertion CDS_variant 2 B11,C30

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780824.1
646 aa
N
1
323
646
PPR_2
PPR
PPR_2
PPR_1
PPR_2
PPR
PPR_1
PPR_3
PPR_2
TPR_24
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_long
PPR_1
PPR
TPR_24
PPR_2
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR
PPR_2
PPR_1
PPR_2
PPR
C
PF13041 PPR_2 83-132 aa PF01535 PPR 88-114 aa PF13041 PPR_2 153-203 aa PF12854 PPR_1 187-214 aa PF13041 PPR_2 189-240 aa PF01535 PPR 192-218 aa PF12854 PPR_1 224-252 aa PF13812 PPR_3 225-271 aa PF13041 PPR_2 226-275 aa PF23276 TPR_24 229-287 aa PF01535 PPR 230-259 aa PF13812 PPR_3 250-305 aa PF12854 PPR_1 257-289 aa PF13041 PPR_2 263-307 aa PF01535 PPR 264-290 aa PF13812 PPR_3 285-343 aa PF12854 PPR_1 294-325 aa PF13041 PPR_2 296-344 aa PF01535 PPR 299-327 aa PF13812 PPR_3 323-372 aa PF12854 PPR_1 329-356 aa PF13041 PPR_2 331-379 aa PF01535 PPR 334-363 aa PF13812 PPR_3 355-411 aa PF12854 PPR_1 363-395 aa PF13041 PPR_2 366-414 aa PF01535 PPR 369-396 aa PF17177 PPR_long 385-500 aa PF12854 PPR_1 399-430 aa PF01535 PPR 405-434 aa PF23276 TPR_24 406-497 aa PF13041 PPR_2 411-450 aa PF13812 PPR_3 424-486 aa PF12854 PPR_1 432-463 aa PF13041 PPR_2 436-484 aa PF01535 PPR 439-469 aa PF12854 PPR_1 467-498 aa PF13041 PPR_2 471-520 aa PF01535 PPR 474-504 aa PF12854 PPR_1 502-533 aa PF13041 PPR_2 506-554 aa PF01535 PPR 509-539 aa PF13812 PPR_3 530-584 aa PF12854 PPR_1 537-570 aa PF01535 PPR 544-574 aa PF13041 PPR_2 549-590 aa PF12854 PPR_1 572-605 aa PF13041 PPR_2 576-621 aa PF01535 PPR 579-609 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057780824.1 Pfam PF13041 PPR_2 Repeat 83 132 1.3e-184 599.0 PPR repeat family
XP_057780824.1 Pfam PF01535 PPR Repeat 88 114 8.3e-108 346.1 PPR repeat
XP_057780824.1 Pfam PF13041 PPR_2 Repeat 153 203 1.3e-184 599.0 PPR repeat family
XP_057780824.1 Pfam PF12854 PPR_1 Repeat 187 214 5e-147 478.0 PPR repeat
XP_057780824.1 Pfam PF13041 PPR_2 Repeat 189 240 1.3e-184 599.0 PPR repeat family
XP_057780824.1 Pfam PF01535 PPR Repeat 192 218 8.3e-108 346.1 PPR repeat
XP_057780824.1 Pfam PF12854 PPR_1 Repeat 224 252 5e-147 478.0 PPR repeat
XP_057780824.1 Pfam PF13812 PPR_3 Repeat 225 271 1.7e-70 233.7 Pentatricopeptide repeat domain
XP_057780824.1 Pfam PF13041 PPR_2 Repeat 226 275 1.3e-184 599.0 PPR repeat family
XP_057780824.1 Pfam PF23276 TPR_24 Repeat 229 287 1.5e-37 129.2 Pentatricopeptide repeat-containing protein
XP_057780824.1 Pfam PF01535 PPR Repeat 230 259 8.3e-108 346.1 PPR repeat
XP_057780824.1 Pfam PF13812 PPR_3 Repeat 250 305 1.7e-70 233.7 Pentatricopeptide repeat domain
XP_057780824.1 Pfam PF12854 PPR_1 Repeat 257 289 5e-147 478.0 PPR repeat
XP_057780824.1 Pfam PF13041 PPR_2 Repeat 263 307 1.3e-184 599.0 PPR repeat family
XP_057780824.1 Pfam PF01535 PPR Repeat 264 290 8.3e-108 346.1 PPR repeat
XP_057780824.1 Pfam PF13812 PPR_3 Repeat 285 343 1.7e-70 233.7 Pentatricopeptide repeat domain
XP_057780824.1 Pfam PF12854 PPR_1 Repeat 294 325 5e-147 478.0 PPR repeat
XP_057780824.1 Pfam PF13041 PPR_2 Repeat 296 344 1.3e-184 599.0 PPR repeat family
XP_057780824.1 Pfam PF01535 PPR Repeat 299 327 8.3e-108 346.1 PPR repeat
XP_057780824.1 Pfam PF13812 PPR_3 Repeat 323 372 1.7e-70 233.7 Pentatricopeptide repeat domain
XP_057780824.1 Pfam PF12854 PPR_1 Repeat 329 356 5e-147 478.0 PPR repeat
XP_057780824.1 Pfam PF13041 PPR_2 Repeat 331 379 1.3e-184 599.0 PPR repeat family
XP_057780824.1 Pfam PF01535 PPR Repeat 334 363 8.3e-108 346.1 PPR repeat
XP_057780824.1 Pfam PF13812 PPR_3 Repeat 355 411 1.7e-70 233.7 Pentatricopeptide repeat domain
XP_057780824.1 Pfam PF12854 PPR_1 Repeat 363 395 5e-147 478.0 PPR repeat
XP_057780824.1 Pfam PF13041 PPR_2 Repeat 366 414 1.3e-184 599.0 PPR repeat family
XP_057780824.1 Pfam PF01535 PPR Repeat 369 396 8.3e-108 346.1 PPR repeat
XP_057780824.1 Pfam PF17177 PPR_long Repeat 385 500 4.7e-29 102.0 Pentacotripeptide-repeat region of PRORP
XP_057780824.1 Pfam PF12854 PPR_1 Repeat 399 430 5e-147 478.0 PPR repeat
XP_057780824.1 Pfam PF01535 PPR Repeat 405 434 8.3e-108 346.1 PPR repeat
XP_057780824.1 Pfam PF23276 TPR_24 Repeat 406 497 1.5e-37 129.2 Pentatricopeptide repeat-containing protein
XP_057780824.1 Pfam PF13041 PPR_2 Repeat 411 450 1.3e-184 599.0 PPR repeat family
XP_057780824.1 Pfam PF13812 PPR_3 Repeat 424 486 1.7e-70 233.7 Pentatricopeptide repeat domain
XP_057780824.1 Pfam PF12854 PPR_1 Repeat 432 463 5e-147 478.0 PPR repeat
XP_057780824.1 Pfam PF13041 PPR_2 Repeat 436 484 1.3e-184 599.0 PPR repeat family
XP_057780824.1 Pfam PF01535 PPR Repeat 439 469 8.3e-108 346.1 PPR repeat
XP_057780824.1 Pfam PF12854 PPR_1 Repeat 467 498 5e-147 478.0 PPR repeat
XP_057780824.1 Pfam PF13041 PPR_2 Repeat 471 520 1.3e-184 599.0 PPR repeat family
XP_057780824.1 Pfam PF01535 PPR Repeat 474 504 8.3e-108 346.1 PPR repeat
XP_057780824.1 Pfam PF12854 PPR_1 Repeat 502 533 5e-147 478.0 PPR repeat
XP_057780824.1 Pfam PF13041 PPR_2 Repeat 506 554 1.3e-184 599.0 PPR repeat family
XP_057780824.1 Pfam PF01535 PPR Repeat 509 539 8.3e-108 346.1 PPR repeat
XP_057780824.1 Pfam PF13812 PPR_3 Repeat 530 584 1.7e-70 233.7 Pentatricopeptide repeat domain
XP_057780824.1 Pfam PF12854 PPR_1 Repeat 537 570 5e-147 478.0 PPR repeat
XP_057780824.1 Pfam PF01535 PPR Repeat 544 574 8.3e-108 346.1 PPR repeat
XP_057780824.1 Pfam PF13041 PPR_2 Repeat 549 590 1.3e-184 599.0 PPR repeat family
XP_057780824.1 Pfam PF12854 PPR_1 Repeat 572 605 5e-147 478.0 PPR repeat
XP_057780824.1 Pfam PF13041 PPR_2 Repeat 576 621 1.3e-184 599.0 PPR repeat family
XP_057780824.1 Pfam PF01535 PPR Repeat 579 609 8.3e-108 346.1 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XR_009093471.1
CTTCCCCAGCTAGCACTTCCAATTCCCCAAATCTCCGTTTCTTCTCACAAAACCCTATCTCTCCTTCTTCAACAGCGAGCTTCCCCAATTCTTCAGCTTTTAATTTCAGTGGTCACAACTACAAAACTATCCCAAGAATGAGGTCTAACCACGCCGCCAAGTTTCTCGGTAGAATTTTGTCGAATTCTTCATCTAAATTCTCCACTTTTGCCATCACTTCTCCACATTATCAATCATTTCTTCTACCCAGTTTTCATTTT...
XM_057924841.1
TTCCCCAGCTAGCACTTCCAATTCCCCAAATCTCCGTTTCTTCTCACAAAACCCTATCTCTCCTTCTTCAACAGCGAGCTTCCCCAATTCTTCAGCTTTTAATTTCAGTGGTCACAACTACAAAACTATCCCAAGAATGAGGTCTAACCACGCCGCCAAGTTTCTCGGTAGAATTTTGTCGAATTCTTCATCTAAATTCTCCACTTTTGCCATCACTTCTCCACATTATCAATCATTTCTTCTACCCAGTTTTCATTTTG...

CDS

1 records

下载 CDS FASTA
LOC130999326
ATGAGGTCTAACCACGCCGCCAAGTTTCTCGGTAGAATTTTGTCGAATTCTTCATCTAAATTCTCCACTTTTGCCATCACTTCTCCACATTATCAATCATTTCTTCTACCCAGTTTTCATTTTGATAATGCCAGCTGCCAAATGAGGAGACACTTCTCCGCCTATCCCAGATTCGATTTTGAATCTATACGTGAACCCAATGATGCCGTCGCTCTATTTCAGGATATGATGGGAACGGAGCCGCTTCCTTCTGTTAAGCT...

Protein

1 records

下载 Protein FASTA
XP_057780824.1
MRSNHAAKFLGRILSNSSSKFSTFAITSPHYQSFLLPSFHFDNASCQMRRHFSAYPRFDFESIREPNDAVALFQDMMGTEPLPSVKLFSRLLSAVVKLKQYSAALHLFEKMLQRDAPVNHYTLSIAIDCYCRLKRPDFGFAILGSFFKRGFEPTVVTFNTLVKGLLFVERIPEAAKLLGKLSAYQLCEPDEYTYSTIINGLCKAGDILQAIDLLCSLEKGKGSCKPDVYAYSAVIDGLCKNGKVDEALQLLSTLGDKGIS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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