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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G004730

染色体: Chr08 坐标: 56671243-56673282 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G004730
名称SmilChr08G004730
描述putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向56671243 - 56673282 / -

ID 对照

NCBI Gene IDLOC130999336
GeneID130999336
locus_tag-
NCBI NameLOC130999336
原始查询LOC130999336

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial
产物putative pentatricopeptide repeat-containing protein At1g12700%2C mitochondrial
ArabidopsisAT1G12700 (RPF1)
RNA processing FACTOR [Source:NCBI gene (formerly Entrezgene);Acc:837825]
identity=36.6; qcov=0.876; evalue=7.41e-132; confidence=medium
RiceOs01g0783100
-
identity=31.4; qcov=0.83; evalue=7.81e-89; confidence=low
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:130999336

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 1.00000 XP_057780837.1
2 Chloroplast 叶绿体 0.20000 XP_057780837.1
3 Nucleus 细胞核 0.00000 XP_057780837.1
4 Chromosome 染色体 0.00000 XP_057780837.1
5 Centromere 着丝粒 0.00000 XP_057780837.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:56671363 C T EMS_canonical_SNV CDS_variant 3 C32,C80,D4
Chr8:56671407 C T EMS_canonical_SNV CDS_variant 1 B104
Chr8:56671485 A AGT 2bp_insertion frameshift_variant 3 A8,B83,C79
Chr8:56671485 A AGT 2bp_insertion CDS_variant 3 A8,B83,C79
Chr8:56671596 G A EMS_canonical_SNV CDS_variant 5 A16,B35,B36,B8,C78
Chr8:56671618 G A EMS_canonical_SNV CDS_variant 1 C15
Chr8:56671649 C T EMS_canonical_SNV CDS_variant 3 C29,C68,C83
Chr8:56671651 C T EMS_canonical_SNV CDS_variant 3 C29,C68,C83
Chr8:56671669 TG T 1bp_deletion frameshift_variant 9 A15,B100,B102,B45,B48,B77,C28,C38,C54
Chr8:56671674 G A EMS_canonical_SNV CDS_variant 1 C36
Chr8:56671822 G A EMS_canonical_SNV CDS_variant 1 C59
Chr8:56671835 G A EMS_canonical_SNV CDS_variant 2 C76,D8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780837.1
611 aa
N
1
306
611
PPR_2
PPR
PPR
PPR_3
PPR_1
PPR_2
TPR_24
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_long
TPR_24
PPR_3
PPR_1
PPR
PPR_2
PPR_1
PPR_2
PPR
C
PF13041 PPR_2 152-202 aa PF01535 PPR 155-179 aa PF01535 PPR 192-218 aa PF13812 PPR_3 220-270 aa PF12854 PPR_1 224-251 aa PF13041 PPR_2 225-274 aa PF23276 TPR_24 226-317 aa PF01535 PPR 228-258 aa PF12854 PPR_1 256-289 aa PF13041 PPR_2 261-309 aa PF01535 PPR 263-290 aa PF13812 PPR_3 284-342 aa PF12854 PPR_1 293-324 aa PF13041 PPR_2 295-342 aa PF01535 PPR 299-326 aa PF13812 PPR_3 323-377 aa PF12854 PPR_1 328-355 aa PF13041 PPR_2 330-379 aa PF01535 PPR 333-363 aa PF13812 PPR_3 353-390 aa PF12854 PPR_1 362-390 aa PF13041 PPR_2 365-413 aa PF01535 PPR 368-391 aa PF13812 PPR_3 395-445 aa PF12854 PPR_1 396-429 aa PF13041 PPR_2 400-448 aa PF01535 PPR 403-430 aa PF12854 PPR_1 433-464 aa PF13041 PPR_2 435-484 aa PF01535 PPR 439-468 aa PF13812 PPR_3 458-516 aa PF12854 PPR_1 466-497 aa PF13041 PPR_2 470-519 aa PF01535 PPR 473-502 aa PF17177 PPR_long 486-603 aa PF23276 TPR_24 493-589 aa PF13812 PPR_3 494-548 aa PF12854 PPR_1 501-533 aa PF01535 PPR 508-538 aa PF13041 PPR_2 513-554 aa PF12854 PPR_1 536-568 aa PF13041 PPR_2 540-584 aa PF01535 PPR 543-573 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057780837.1 Pfam PF13041 PPR_2 Repeat 152 202 1.7e-158 515.4 PPR repeat family
XP_057780837.1 Pfam PF01535 PPR Repeat 155 179 2.7e-89 288.1 PPR repeat
XP_057780837.1 Pfam PF01535 PPR Repeat 192 218 2.7e-89 288.1 PPR repeat
XP_057780837.1 Pfam PF13812 PPR_3 Repeat 220 270 1.3e-64 214.9 Pentatricopeptide repeat domain
XP_057780837.1 Pfam PF12854 PPR_1 Repeat 224 251 1.7e-124 405.9 PPR repeat
XP_057780837.1 Pfam PF13041 PPR_2 Repeat 225 274 1.7e-158 515.4 PPR repeat family
XP_057780837.1 Pfam PF23276 TPR_24 Repeat 226 317 1.6e-36 125.9 Pentatricopeptide repeat-containing protein
XP_057780837.1 Pfam PF01535 PPR Repeat 228 258 2.7e-89 288.1 PPR repeat
XP_057780837.1 Pfam PF12854 PPR_1 Repeat 256 289 1.7e-124 405.9 PPR repeat
XP_057780837.1 Pfam PF13041 PPR_2 Repeat 261 309 1.7e-158 515.4 PPR repeat family
XP_057780837.1 Pfam PF01535 PPR Repeat 263 290 2.7e-89 288.1 PPR repeat
XP_057780837.1 Pfam PF13812 PPR_3 Repeat 284 342 1.3e-64 214.9 Pentatricopeptide repeat domain
XP_057780837.1 Pfam PF12854 PPR_1 Repeat 293 324 1.7e-124 405.9 PPR repeat
XP_057780837.1 Pfam PF13041 PPR_2 Repeat 295 342 1.7e-158 515.4 PPR repeat family
XP_057780837.1 Pfam PF01535 PPR Repeat 299 326 2.7e-89 288.1 PPR repeat
XP_057780837.1 Pfam PF13812 PPR_3 Repeat 323 377 1.3e-64 214.9 Pentatricopeptide repeat domain
XP_057780837.1 Pfam PF12854 PPR_1 Repeat 328 355 1.7e-124 405.9 PPR repeat
XP_057780837.1 Pfam PF13041 PPR_2 Repeat 330 379 1.7e-158 515.4 PPR repeat family
XP_057780837.1 Pfam PF01535 PPR Repeat 333 363 2.7e-89 288.1 PPR repeat
XP_057780837.1 Pfam PF13812 PPR_3 Repeat 353 390 1.3e-64 214.9 Pentatricopeptide repeat domain
XP_057780837.1 Pfam PF12854 PPR_1 Repeat 362 390 1.7e-124 405.9 PPR repeat
XP_057780837.1 Pfam PF13041 PPR_2 Repeat 365 413 1.7e-158 515.4 PPR repeat family
XP_057780837.1 Pfam PF01535 PPR Repeat 368 391 2.7e-89 288.1 PPR repeat
XP_057780837.1 Pfam PF13812 PPR_3 Repeat 395 445 1.3e-64 214.9 Pentatricopeptide repeat domain
XP_057780837.1 Pfam PF12854 PPR_1 Repeat 396 429 1.7e-124 405.9 PPR repeat
XP_057780837.1 Pfam PF13041 PPR_2 Repeat 400 448 1.7e-158 515.4 PPR repeat family
XP_057780837.1 Pfam PF01535 PPR Repeat 403 430 2.7e-89 288.1 PPR repeat
XP_057780837.1 Pfam PF12854 PPR_1 Repeat 433 464 1.7e-124 405.9 PPR repeat
XP_057780837.1 Pfam PF13041 PPR_2 Repeat 435 484 1.7e-158 515.4 PPR repeat family
XP_057780837.1 Pfam PF01535 PPR Repeat 439 468 2.7e-89 288.1 PPR repeat
XP_057780837.1 Pfam PF13812 PPR_3 Repeat 458 516 1.3e-64 214.9 Pentatricopeptide repeat domain
XP_057780837.1 Pfam PF12854 PPR_1 Repeat 466 497 1.7e-124 405.9 PPR repeat
XP_057780837.1 Pfam PF13041 PPR_2 Repeat 470 519 1.7e-158 515.4 PPR repeat family
XP_057780837.1 Pfam PF01535 PPR Repeat 473 502 2.7e-89 288.1 PPR repeat
XP_057780837.1 Pfam PF17177 PPR_long Repeat 486 603 2e-29 103.2 Pentacotripeptide-repeat region of PRORP
XP_057780837.1 Pfam PF23276 TPR_24 Repeat 493 589 1.6e-36 125.9 Pentatricopeptide repeat-containing protein
XP_057780837.1 Pfam PF13812 PPR_3 Repeat 494 548 1.3e-64 214.9 Pentatricopeptide repeat domain
XP_057780837.1 Pfam PF12854 PPR_1 Repeat 501 533 1.7e-124 405.9 PPR repeat
XP_057780837.1 Pfam PF01535 PPR Repeat 508 538 2.7e-89 288.1 PPR repeat
XP_057780837.1 Pfam PF13041 PPR_2 Repeat 513 554 1.7e-158 515.4 PPR repeat family
XP_057780837.1 Pfam PF12854 PPR_1 Repeat 536 568 1.7e-124 405.9 PPR repeat
XP_057780837.1 Pfam PF13041 PPR_2 Repeat 540 584 1.7e-158 515.4 PPR repeat family
XP_057780837.1 Pfam PF01535 PPR Repeat 543 573 2.7e-89 288.1 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057924854.1
TTGAAATATTTCATAATGCAAAATTTGAGCTAAGAGAGTGAGAAACCCTACAAAAACTGGGAGGAAATTGATAGATACTTTACCTTTATTTCCCAGCACTCCGAATTCCCCAAAACTCGTTTTTTTCACCAAAACTAACCCAAGAATGAGGTCGAACCACGCCGCCATGTTTCTGCCTAGAATTTTGTCAAATTCTTCATCTAAATTCTCCACTTTTGCCATCGCTTCTCTACATTCTCAATCATTTCTTCTACCCAGTC...

CDS

1 records

下载 CDS FASTA
LOC130999336
ATGAGGTCGAACCACGCCGCCATGTTTCTGCCTAGAATTTTGTCAAATTCTTCATCTAAATTCTCCACTTTTGCCATCGCTTCTCTACATTCTCAATCATTTCTTCTACCCAGTCTTAATTTTGATAATGCCAGCTGCCAAATGAGACACTTCTCCGCCTATCCCAGATTCGATTTTGGAACTATACGTGAGCCCAACGATGCCGTCGCTCTATTTCGGGAAATGGTGAGGACGCAGCCGCTCCCTTATCTTTCTGTTTT...

Protein

1 records

下载 Protein FASTA
XP_057780837.1
MRSNHAAMFLPRILSNSSSKFSTFAIASLHSQSFLLPSLNFDNASCQMRHFSAYPRFDFGTIREPNDAVALFREMVRTQPLPYLSVFSKLLSTVVKMEQYSLALHLIDEMLQRDVPVNHYILNIAIDCYCRQKRPDFGFAILGIFFKRGYEPTVVTFTTLIKGLLLVGRIPEATKVLWKLLVYQLCEPNEQTYSTMINGICKAVGTLHALELLCLLEKEKGIYKPNIYSYNALIDGLCNEGKVDDALQLFSSLGDKGISP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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