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中文 EN
同源 qcov 为最佳单个 HSP 在查询序列上的坐标跨度／序列长度；置信度是规则分级，不是已验证的正交关系。

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及有 accession 序列支持的文献基因名查询；公开文献名称仅收录身份已有序列证据的记录。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G004656

染色体: Chr08 坐标: 56056905-56059357 链方向: + 类型: protein_coding

基本信息

统一基因 IDSmilChr08G004656
名称SmilChr08G004656
描述pentatricopeptide repeat-containing protein At1g62680, mitochondrial-like
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向56056905 - 56059357 / +

ID 对照

NCBI Gene IDLOC130999344
GeneID130999344
locus_tag-
NCBI 名称LOC130999344
原始查询LOC130999344

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At1g62680, mitochondrial-like
产物pentatricopeptide repeat-containing protein At1g62680%2C mitochondrial-like
拟南芥AT1G12775 (AT1G12775)
Pentatricopeptide repeat (PPR) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:3766712]
identity=30.48; qcov=0.958; evalue=8.86e-92; confidence=low
水稻Os06g0152500
-
identity=34.4; qcov=0.774; evalue=9.12e-73; confidence=low
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:130999344

打开注释模块

亚细胞定位候选（最多五项）

预测得分表示模型支持程度，不能作为定位概率；所有候选均需实验验证。

方法与数据说明

当前结果已使用全部46,325条核基因组蛋白的完整原生特征重算。逐条核验39×39×7 PROFEAT、1280维ESM2、整条序列及五组模型的定位判定；当前模型、阈值文件和执行种子有记录。历史缓存及历史执行版本仍未确认。结果为计算候选，预测得分表示模型支持程度，不是校准概率，也不代表实验确认或已建立的预测准确率。模型含部分动物相关标签，应谨慎解读其在植物中的适用性。 四舍五入后概率与阈值相等的481条记录已按未舍入模型值再次复核，原始投票全部一致。

排序定位位置预测得分蛋白 ID
1 线粒体 0.80000 SmilChr08G004656.1
2 叶绿体 0.20000 SmilChr08G004656.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 参考等位基因 变异等位基因 类型 影响 携带材料数 材料
Chr8:56057073 C T EMS_canonical_SNV CDS_variant 3 C13,C14,C80
Chr8:56057111 C T EMS_canonical_SNV CDS_variant 2 B76,D10
Chr8:56057176 C T EMS_canonical_SNV CDS_variant 3 B104,C26,C75
Chr8:56057179 C T EMS_canonical_SNV CDS_variant 4 B104,B118,B137,C25
Chr8:56057198 G A EMS_canonical_SNV CDS_variant 1 B59
Chr8:56057285 TTA T 2bp_deletion frameshift_variant 1 D6
Chr8:56057285 TTA T 2bp_deletion CDS_variant 1 D6
Chr8:56057291 G A EMS_canonical_SNV CDS_variant 5 A7,B59,B72,B89,C39
Chr8:56057390 C T EMS_canonical_SNV CDS_variant 4 A20,C34,C61,C85
Chr8:56057467 G A EMS_canonical_SNV CDS_variant 5 B133,C26,C82,C85,D3
Chr8:56057477 TC T 1bp_deletion frameshift_variant 12 A1,A10,B11,B132,B16,B20,B87,C39,C51,C53,C63,D9
Chr8:56057490 C T EMS_canonical_SNV CDS_variant 1 C87

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

SmilChr08G004656.1
来源蛋白: XP_057780850.1
526 aa
N
1
263
526
PPR_2
PPR
PPR
PPR_2
TPR_24
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR
PPR_2
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR
PPR_3
PPR_1
PPR_2
PPR
TPR_24
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
C
PF13041 PPR_2 75-122 aa PF01535 PPR 78-107 aa PF01535 PPR 151-174 aa PF13041 PPR_2 187-229 aa PF23276 TPR_24 197-251 aa PF13812 PPR_3 209-260 aa PF12854 PPR_1 212-243 aa PF13041 PPR_2 216-263 aa PF01535 PPR 219-247 aa PF12854 PPR_1 247-279 aa PF01535 PPR 253-283 aa PF13041 PPR_2 257-299 aa PF13812 PPR_3 273-331 aa PF12854 PPR_1 281-310 aa PF13041 PPR_2 285-332 aa PF01535 PPR 288-318 aa PF13812 PPR_3 310-365 aa PF12854 PPR_1 316-349 aa PF13041 PPR_2 321-368 aa PF01535 PPR 324-350 aa PF12854 PPR_1 353-382 aa PF01535 PPR 359-388 aa PF13812 PPR_3 378-435 aa PF12854 PPR_1 386-417 aa PF13041 PPR_2 390-439 aa PF01535 PPR 393-423 aa PF23276 TPR_24 404-496 aa PF13812 PPR_3 414-470 aa PF12854 PPR_1 421-454 aa PF13041 PPR_2 425-473 aa PF01535 PPR 429-458 aa PF13812 PPR_3 448-494 aa PF12854 PPR_1 456-489 aa PF13041 PPR_2 462-502 aa PF01535 PPR 463-493 aa
SmilChr08G004656.2
来源蛋白: XP_057780851.1
526 aa
N
1
263
526
PPR_2
PPR
PPR
PPR_2
TPR_24
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR
PPR_2
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR
PPR_3
PPR_1
PPR_2
PPR
TPR_24
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
C
PF13041 PPR_2 75-122 aa PF01535 PPR 78-107 aa PF01535 PPR 151-174 aa PF13041 PPR_2 187-229 aa PF23276 TPR_24 197-251 aa PF13812 PPR_3 209-260 aa PF12854 PPR_1 212-243 aa PF13041 PPR_2 216-263 aa PF01535 PPR 219-247 aa PF12854 PPR_1 247-279 aa PF01535 PPR 253-283 aa PF13041 PPR_2 257-299 aa PF13812 PPR_3 273-331 aa PF12854 PPR_1 281-310 aa PF13041 PPR_2 285-332 aa PF01535 PPR 288-318 aa PF13812 PPR_3 310-365 aa PF12854 PPR_1 316-349 aa PF13041 PPR_2 321-368 aa PF01535 PPR 324-350 aa PF12854 PPR_1 353-382 aa PF01535 PPR 359-388 aa PF13812 PPR_3 378-435 aa PF12854 PPR_1 386-417 aa PF13041 PPR_2 390-439 aa PF01535 PPR 393-423 aa PF23276 TPR_24 404-496 aa PF13812 PPR_3 414-470 aa PF12854 PPR_1 421-454 aa PF13041 PPR_2 425-473 aa PF01535 PPR 429-458 aa PF13812 PPR_3 448-494 aa PF12854 PPR_1 456-489 aa PF13041 PPR_2 462-502 aa PF01535 PPR 463-493 aa
蛋白 ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value 得分 说明
SmilChr08G004656.1
XP_057780850.1		 Pfam PF13041 PPR_2 Repeat 75 122 9e-119 388.2 PPR repeat family
SmilChr08G004656.1
XP_057780850.1		 Pfam PF01535 PPR Repeat 78 107 9.4e-74 239.4 PPR repeat
SmilChr08G004656.1
XP_057780850.1		 Pfam PF01535 PPR Repeat 151 174 9.4e-74 239.4 PPR repeat
SmilChr08G004656.1
XP_057780850.1		 Pfam PF13041 PPR_2 Repeat 187 229 9e-119 388.2 PPR repeat family
SmilChr08G004656.1
XP_057780850.1		 Pfam PF23276 TPR_24 Repeat 197 251 2.8e-28 99.2 Pentatricopeptide repeat-containing protein
SmilChr08G004656.1
XP_057780850.1		 Pfam PF13812 PPR_3 Repeat 209 260 5.3e-53 177.7 Pentatricopeptide repeat domain
SmilChr08G004656.1
XP_057780850.1		 Pfam PF12854 PPR_1 Repeat 212 243 1e-102 336.2 PPR repeat
SmilChr08G004656.1
XP_057780850.1		 Pfam PF13041 PPR_2 Repeat 216 263 9e-119 388.2 PPR repeat family
SmilChr08G004656.1
XP_057780850.1		 Pfam PF01535 PPR Repeat 219 247 9.4e-74 239.4 PPR repeat
SmilChr08G004656.1
XP_057780850.1		 Pfam PF12854 PPR_1 Repeat 247 279 1e-102 336.2 PPR repeat
SmilChr08G004656.1
XP_057780850.1		 Pfam PF01535 PPR Repeat 253 283 9.4e-74 239.4 PPR repeat
SmilChr08G004656.1
XP_057780850.1		 Pfam PF13041 PPR_2 Repeat 257 299 9e-119 388.2 PPR repeat family
SmilChr08G004656.1
XP_057780850.1		 Pfam PF13812 PPR_3 Repeat 273 331 5.3e-53 177.7 Pentatricopeptide repeat domain
SmilChr08G004656.1
XP_057780850.1		 Pfam PF12854 PPR_1 Repeat 281 310 1e-102 336.2 PPR repeat
SmilChr08G004656.1
XP_057780850.1		 Pfam PF13041 PPR_2 Repeat 285 332 9e-119 388.2 PPR repeat family
SmilChr08G004656.1
XP_057780850.1		 Pfam PF01535 PPR Repeat 288 318 9.4e-74 239.4 PPR repeat
SmilChr08G004656.1
XP_057780850.1		 Pfam PF13812 PPR_3 Repeat 310 365 5.3e-53 177.7 Pentatricopeptide repeat domain
SmilChr08G004656.1
XP_057780850.1		 Pfam PF12854 PPR_1 Repeat 316 349 1e-102 336.2 PPR repeat
SmilChr08G004656.1
XP_057780850.1		 Pfam PF13041 PPR_2 Repeat 321 368 9e-119 388.2 PPR repeat family
SmilChr08G004656.1
XP_057780850.1		 Pfam PF01535 PPR Repeat 324 350 9.4e-74 239.4 PPR repeat
SmilChr08G004656.1
XP_057780850.1		 Pfam PF12854 PPR_1 Repeat 353 382 1e-102 336.2 PPR repeat
SmilChr08G004656.1
XP_057780850.1		 Pfam PF01535 PPR Repeat 359 388 9.4e-74 239.4 PPR repeat
SmilChr08G004656.1
XP_057780850.1		 Pfam PF13812 PPR_3 Repeat 378 435 5.3e-53 177.7 Pentatricopeptide repeat domain
SmilChr08G004656.1
XP_057780850.1		 Pfam PF12854 PPR_1 Repeat 386 417 1e-102 336.2 PPR repeat
SmilChr08G004656.1
XP_057780850.1		 Pfam PF13041 PPR_2 Repeat 390 439 9e-119 388.2 PPR repeat family
SmilChr08G004656.1
XP_057780850.1		 Pfam PF01535 PPR Repeat 393 423 9.4e-74 239.4 PPR repeat
SmilChr08G004656.1
XP_057780850.1		 Pfam PF23276 TPR_24 Repeat 404 496 2.8e-28 99.2 Pentatricopeptide repeat-containing protein
SmilChr08G004656.1
XP_057780850.1		 Pfam PF13812 PPR_3 Repeat 414 470 5.3e-53 177.7 Pentatricopeptide repeat domain
SmilChr08G004656.1
XP_057780850.1		 Pfam PF12854 PPR_1 Repeat 421 454 1e-102 336.2 PPR repeat
SmilChr08G004656.1
XP_057780850.1		 Pfam PF13041 PPR_2 Repeat 425 473 9e-119 388.2 PPR repeat family
SmilChr08G004656.1
XP_057780850.1		 Pfam PF01535 PPR Repeat 429 458 9.4e-74 239.4 PPR repeat
SmilChr08G004656.1
XP_057780850.1		 Pfam PF13812 PPR_3 Repeat 448 494 5.3e-53 177.7 Pentatricopeptide repeat domain
SmilChr08G004656.1
XP_057780850.1		 Pfam PF12854 PPR_1 Repeat 456 489 1e-102 336.2 PPR repeat
SmilChr08G004656.1
XP_057780850.1		 Pfam PF13041 PPR_2 Repeat 462 502 9e-119 388.2 PPR repeat family
SmilChr08G004656.1
XP_057780850.1		 Pfam PF01535 PPR Repeat 463 493 9.4e-74 239.4 PPR repeat
SmilChr08G004656.2
XP_057780851.1		 Pfam PF13041 PPR_2 Repeat 75 122 9e-119 388.2 PPR repeat family
SmilChr08G004656.2
XP_057780851.1		 Pfam PF01535 PPR Repeat 78 107 9.4e-74 239.4 PPR repeat
SmilChr08G004656.2
XP_057780851.1		 Pfam PF01535 PPR Repeat 151 174 9.4e-74 239.4 PPR repeat
SmilChr08G004656.2
XP_057780851.1		 Pfam PF13041 PPR_2 Repeat 187 229 9e-119 388.2 PPR repeat family
SmilChr08G004656.2
XP_057780851.1		 Pfam PF23276 TPR_24 Repeat 197 251 2.8e-28 99.2 Pentatricopeptide repeat-containing protein
SmilChr08G004656.2
XP_057780851.1		 Pfam PF13812 PPR_3 Repeat 209 260 5.3e-53 177.7 Pentatricopeptide repeat domain
SmilChr08G004656.2
XP_057780851.1		 Pfam PF12854 PPR_1 Repeat 212 243 1e-102 336.2 PPR repeat
SmilChr08G004656.2
XP_057780851.1		 Pfam PF13041 PPR_2 Repeat 216 263 9e-119 388.2 PPR repeat family
SmilChr08G004656.2
XP_057780851.1		 Pfam PF01535 PPR Repeat 219 247 9.4e-74 239.4 PPR repeat
SmilChr08G004656.2
XP_057780851.1		 Pfam PF12854 PPR_1 Repeat 247 279 1e-102 336.2 PPR repeat
SmilChr08G004656.2
XP_057780851.1		 Pfam PF01535 PPR Repeat 253 283 9.4e-74 239.4 PPR repeat
SmilChr08G004656.2
XP_057780851.1		 Pfam PF13041 PPR_2 Repeat 257 299 9e-119 388.2 PPR repeat family
SmilChr08G004656.2
XP_057780851.1		 Pfam PF13812 PPR_3 Repeat 273 331 5.3e-53 177.7 Pentatricopeptide repeat domain
SmilChr08G004656.2
XP_057780851.1		 Pfam PF12854 PPR_1 Repeat 281 310 1e-102 336.2 PPR repeat
SmilChr08G004656.2
XP_057780851.1		 Pfam PF13041 PPR_2 Repeat 285 332 9e-119 388.2 PPR repeat family
SmilChr08G004656.2
XP_057780851.1		 Pfam PF01535 PPR Repeat 288 318 9.4e-74 239.4 PPR repeat
SmilChr08G004656.2
XP_057780851.1		 Pfam PF13812 PPR_3 Repeat 310 365 5.3e-53 177.7 Pentatricopeptide repeat domain
SmilChr08G004656.2
XP_057780851.1		 Pfam PF12854 PPR_1 Repeat 316 349 1e-102 336.2 PPR repeat
SmilChr08G004656.2
XP_057780851.1		 Pfam PF13041 PPR_2 Repeat 321 368 9e-119 388.2 PPR repeat family
SmilChr08G004656.2
XP_057780851.1		 Pfam PF01535 PPR Repeat 324 350 9.4e-74 239.4 PPR repeat
SmilChr08G004656.2
XP_057780851.1		 Pfam PF12854 PPR_1 Repeat 353 382 1e-102 336.2 PPR repeat
SmilChr08G004656.2
XP_057780851.1		 Pfam PF01535 PPR Repeat 359 388 9.4e-74 239.4 PPR repeat
SmilChr08G004656.2
XP_057780851.1		 Pfam PF13812 PPR_3 Repeat 378 435 5.3e-53 177.7 Pentatricopeptide repeat domain
SmilChr08G004656.2
XP_057780851.1		 Pfam PF12854 PPR_1 Repeat 386 417 1e-102 336.2 PPR repeat
SmilChr08G004656.2
XP_057780851.1		 Pfam PF13041 PPR_2 Repeat 390 439 9e-119 388.2 PPR repeat family
SmilChr08G004656.2
XP_057780851.1		 Pfam PF01535 PPR Repeat 393 423 9.4e-74 239.4 PPR repeat
SmilChr08G004656.2
XP_057780851.1		 Pfam PF23276 TPR_24 Repeat 404 496 2.8e-28 99.2 Pentatricopeptide repeat-containing protein
SmilChr08G004656.2
XP_057780851.1		 Pfam PF13812 PPR_3 Repeat 414 470 5.3e-53 177.7 Pentatricopeptide repeat domain
SmilChr08G004656.2
XP_057780851.1		 Pfam PF12854 PPR_1 Repeat 421 454 1e-102 336.2 PPR repeat
SmilChr08G004656.2
XP_057780851.1		 Pfam PF13041 PPR_2 Repeat 425 473 9e-119 388.2 PPR repeat family
SmilChr08G004656.2
XP_057780851.1		 Pfam PF01535 PPR Repeat 429 458 9.4e-74 239.4 PPR repeat
SmilChr08G004656.2
XP_057780851.1		 Pfam PF13812 PPR_3 Repeat 448 494 5.3e-53 177.7 Pentatricopeptide repeat domain
SmilChr08G004656.2
XP_057780851.1		 Pfam PF12854 PPR_1 Repeat 456 489 1e-102 336.2 PPR repeat
SmilChr08G004656.2
XP_057780851.1		 Pfam PF13041 PPR_2 Repeat 462 502 9e-119 388.2 PPR repeat family
SmilChr08G004656.2
XP_057780851.1		 Pfam PF01535 PPR Repeat 463 493 9.4e-74 239.4 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。蛋白及对应 CDS 使用“基因 ID.序号”；序号在当前参考发布内固定，来源 accession 同时保留。

cDNA

2 records

下载 cDNA FASTA
XM_057924867.1
ATTTATTGAAACCCTTCTCTCTCACTTGCTACCTTTGTTCAGATCTAATCTCGCAGTCTCCCTTTCCTCACATTAAATCTCAGCGCAATCTCGCAGTTTCCCTTTCTTCACATTAAAACCTCGCCGCCGATTAAGGATGATGAGCAGAAGAGCAGCTGTTTCTGCAATCGATCTCATTCATGGAAGAGGATTTCTCAATCGATGGTCGCATAAATCGGGTATTCTCTCTCCTCCGTTCTCTCTCTTCTCTTCCCAGGCTT...
XM_057924868.1
TGAAACCCTTCTCTCTCACTTGCTACCTTTGTTCAGATCTAATCTCGCAGTCTCCCTTTCCTCACATTAAATCTCAGCGCAATCTCGCAGTTTCCCTTTCTTCACATTAAAACCTCGCCGCCGATTAAGGATGATGAGCAGAAGAGCAGCTGTTTCTGCAATCGATCTCATTCATGGAAGAGGATTTCTCAATCGATGGTCGCATAAATCGGGTATTCTCTCTCCTCCGTTCTCTCTCTTCTCTTCCCAGGCTTTTCAAC...

CDS

2 records

下载 CDS FASTA
SmilChr08G004656.1 (XP_057780850.1)
ATGATGAGCAGAAGAGCAGCTGTTTCTGCAATCGATCTCATTCATGGAAGAGGATTTCTCAATCGATGGTCGCATAAATCGGGTATTCTCTCTCCTCCGTTCTCTCTCTTCTCTTCCCAGGCTTTTCAACCTAAGCGTCCCAGCATCGATTTCGGTTGTGTTAAAGAATTAAATGATGCTATTGAATTGTTTCAAAAAATGAAGAGTATGCGGCTGGAGGCTTCTGTTCTCGCGTATAATAAACTTATGAGTGTTAGTGT...
SmilChr08G004656.2 (XP_057780851.1)
ATGATGAGCAGAAGAGCAGCTGTTTCTGCAATCGATCTCATTCATGGAAGAGGATTTCTCAATCGATGGTCGCATAAATCGGGTATTCTCTCTCCTCCGTTCTCTCTCTTCTCTTCCCAGGCTTTTCAACCTAAGCGTCCCAGCATCGATTTCGGTTGTGTTAAAGAATTAAATGATGCTATTGAATTGTTTCAAAAAATGAAGAGTATGCGGCTGGAGGCTTCTGTTCTCGCGTATAATAAACTTATGAGTGTTAGTGT...

Protein

2 records

下载 Protein FASTA
SmilChr08G004656.1 (XP_057780850.1)
MMSRRAAVSAIDLIHGRGFLNRWSHKSGILSPPFSLFSSQAFQPKRPSIDFGCVKELNDAIELFQKMKSMRLEASVLAYNKLMSVSVKIEQYSFALYVFDEMLRMGVPVDVYTMTIAVNCCCLLKDINSGVAIMGFFFKSGYEPNVVTIATLIKGFFMNDKEAEAVKLFEKVLDLNLCEPNGVMILHIIDGLCKVGQVMAAHEQLLRLESSGFRADVWSYSALIDGFCKEGKMEEAGKILKTMTQQNIFPNVITYSSLID...
SmilChr08G004656.2 (XP_057780851.1)
MMSRRAAVSAIDLIHGRGFLNRWSHKSGILSPPFSLFSSQAFQPKRPSIDFGCVKELNDAIELFQKMKSMRLEASVLAYNKLMSVSVKIEQYSFALYVFDEMLRMGVPVDVYTMTIAVNCCCLLKDINSGVAIMGFFFKSGYEPNVVTIATLIKGFFMNDKEAEAVKLFEKVLDLNLCEPNGVMILHIIDGLCKVGQVMAAHEQLLRLESSGFRADVWSYSALIDGFCKEGKMEEAGKILKTMTQQNIFPNVITYSSLID...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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