Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G004771`

染色体: Chr08 坐标: 57022243-57024327 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G004771`
名称	SmilChr08G004771
描述	putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	57022243 - 57024327 / `+`

ID 对照

NCBI Gene ID	`LOC130999429`
GeneID	`130999429`
locus_tag	`-`
NCBI Name	`LOC130999429`
原始查询	`LOC130999429`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial
产物	putative pentatricopeptide repeat-containing protein At1g12700%2C mitochondrial
Arabidopsis	`AT1G12700` (RPF1) RNA processing FACTOR [Source:NCBI gene (formerly Entrezgene);Acc:837825] identity=37.2; qcov=0.879; evalue=1.59e-133; confidence=medium
Rice	`Os08g0107800` - identity=30.9; qcov=0.928; evalue=5.8e-90; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro	-
eggNOG	-
NR	GeneID:130999429

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057780935.1`
2	Chloroplast	叶绿体	0.20000	`XP_057780935.1`
3	Nucleus	细胞核	0.00000	`XP_057780935.1`
4	Chromosome	染色体	0.00000	`XP_057780935.1`
5	Centromere	着丝粒	0.00000	`XP_057780935.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:57022599`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A10,C50,D2
`Chr8:57022601`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B120,B36,C74,D10
`Chr8:57022615`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C74
`Chr8:57022622`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C74
`Chr8:57022633`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B30,B76
`Chr8:57022710`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B82
`Chr8:57022736`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B17
`Chr8:57022798`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B8
`Chr8:57022820`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B25,B37,B5,B90,C38
`Chr8:57022825`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A23,B120,B121,B15,C26
`Chr8:57022913`	`G`	`A`	EMS_canonical_SNV	stop_gained	37	A10,A2,A21,A22,A4,B108,B117,B129,B134,B138,B17,B19,B21,B34,B4,B41,B50,B54,B65,B69,B84,B89,B90,B92,C15,C18,C25,C29,C36,C4,C57,C64,C66,C79,C85,D1,D2
`Chr8:57022932`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B10,B117,B83,C77,C80

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780935.1

611 aa

306

611

PPR_2

PPR_1

PPR_2

PPR

PPR_1

PPR

PPR_1

PPR_3

PPR_2

TPR_24

PPR

PPR_3

PPR_1

PPR_2

PPR

PPR_3

PPR_1

PPR_2

PPR

PPR_long

PPR_3

PPR_1

PPR_2

PPR

PPR_3

PPR_1

PPR_2

PPR

TPR_24

PPR_3

PPR_1

PPR_2

PPR

PPR_3

PPR_1

PPR_2

PPR

PPR_1

PPR_2

PPR

TPR_24

PPR_3

PPR_1

PPR

PPR_2

PF13041 PPR_2 84-131 aa PF12854 PPR_1 148-180 aa PF13041 PPR_2 152-202 aa PF01535 PPR 155-180 aa PF12854 PPR_1 189-213 aa PF01535 PPR 192-218 aa PF12854 PPR_1 223-250 aa PF13812 PPR_3 224-270 aa PF13041 PPR_2 225-274 aa PF23276 TPR_24 228-318 aa PF01535 PPR 229-250 aa PF13812 PPR_3 253-304 aa PF12854 PPR_1 256-288 aa PF13041 PPR_2 260-305 aa PF01535 PPR 263-290 aa PF13812 PPR_3 284-342 aa PF12854 PPR_1 293-324 aa PF13041 PPR_2 295-333 aa PF01535 PPR 298-326 aa PF17177 PPR_long 314-478 aa PF13812 PPR_3 322-378 aa PF12854 PPR_1 328-355 aa PF13041 PPR_2 330-379 aa PF01535 PPR 334-363 aa PF13812 PPR_3 353-411 aa PF12854 PPR_1 362-390 aa PF13041 PPR_2 365-391 aa PF01535 PPR 368-390 aa PF23276 TPR_24 391-496 aa PF13812 PPR_3 396-444 aa PF12854 PPR_1 397-429 aa PF13041 PPR_2 400-449 aa PF01535 PPR 403-432 aa PF13812 PPR_3 424-480 aa PF12854 PPR_1 432-464 aa PF13041 PPR_2 435-483 aa PF01535 PPR 438-468 aa PF12854 PPR_1 466-497 aa PF13041 PPR_2 470-518 aa PF01535 PPR 473-502 aa PF23276 TPR_24 492-589 aa PF13812 PPR_3 494-548 aa PF12854 PPR_1 501-534 aa PF01535 PPR 508-537 aa PF13041 PPR_2 512-554 aa PF13041 PPR_2 540-585 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057780935.1`	Pfam	`PF13041`	PPR_2	Repeat	84	131	1.6e-148	483.5	PPR repeat family
`XP_057780935.1`	Pfam	`PF12854`	PPR_1	Repeat	148	180	3.1e-127	414.6	PPR repeat
`XP_057780935.1`	Pfam	`PF13041`	PPR_2	Repeat	152	202	1.6e-148	483.5	PPR repeat family
`XP_057780935.1`	Pfam	`PF01535`	PPR	Repeat	155	180	1.8e-91	294.9	PPR repeat
`XP_057780935.1`	Pfam	`PF12854`	PPR_1	Repeat	189	213	3.1e-127	414.6	PPR repeat
`XP_057780935.1`	Pfam	`PF01535`	PPR	Repeat	192	218	1.8e-91	294.9	PPR repeat
`XP_057780935.1`	Pfam	`PF12854`	PPR_1	Repeat	223	250	3.1e-127	414.6	PPR repeat
`XP_057780935.1`	Pfam	`PF13812`	PPR_3	Repeat	224	270	1.9e-66	220.7	Pentatricopeptide repeat domain
`XP_057780935.1`	Pfam	`PF13041`	PPR_2	Repeat	225	274	1.6e-148	483.5	PPR repeat family
`XP_057780935.1`	Pfam	`PF23276`	TPR_24	Repeat	228	318	2.3e-33	115.6	Pentatricopeptide repeat-containing protein
`XP_057780935.1`	Pfam	`PF01535`	PPR	Repeat	229	250	1.8e-91	294.9	PPR repeat
`XP_057780935.1`	Pfam	`PF13812`	PPR_3	Repeat	253	304	1.9e-66	220.7	Pentatricopeptide repeat domain
`XP_057780935.1`	Pfam	`PF12854`	PPR_1	Repeat	256	288	3.1e-127	414.6	PPR repeat
`XP_057780935.1`	Pfam	`PF13041`	PPR_2	Repeat	260	305	1.6e-148	483.5	PPR repeat family
`XP_057780935.1`	Pfam	`PF01535`	PPR	Repeat	263	290	1.8e-91	294.9	PPR repeat
`XP_057780935.1`	Pfam	`PF13812`	PPR_3	Repeat	284	342	1.9e-66	220.7	Pentatricopeptide repeat domain
`XP_057780935.1`	Pfam	`PF12854`	PPR_1	Repeat	293	324	3.1e-127	414.6	PPR repeat
`XP_057780935.1`	Pfam	`PF13041`	PPR_2	Repeat	295	333	1.6e-148	483.5	PPR repeat family
`XP_057780935.1`	Pfam	`PF01535`	PPR	Repeat	298	326	1.8e-91	294.9	PPR repeat
`XP_057780935.1`	Pfam	`PF17177`	PPR_long	Repeat	314	478	4.5e-28	98.8	Pentacotripeptide-repeat region of PRORP
`XP_057780935.1`	Pfam	`PF13812`	PPR_3	Repeat	322	378	1.9e-66	220.7	Pentatricopeptide repeat domain
`XP_057780935.1`	Pfam	`PF12854`	PPR_1	Repeat	328	355	3.1e-127	414.6	PPR repeat
`XP_057780935.1`	Pfam	`PF13041`	PPR_2	Repeat	330	379	1.6e-148	483.5	PPR repeat family
`XP_057780935.1`	Pfam	`PF01535`	PPR	Repeat	334	363	1.8e-91	294.9	PPR repeat
`XP_057780935.1`	Pfam	`PF13812`	PPR_3	Repeat	353	411	1.9e-66	220.7	Pentatricopeptide repeat domain
`XP_057780935.1`	Pfam	`PF12854`	PPR_1	Repeat	362	390	3.1e-127	414.6	PPR repeat
`XP_057780935.1`	Pfam	`PF13041`	PPR_2	Repeat	365	391	1.6e-148	483.5	PPR repeat family
`XP_057780935.1`	Pfam	`PF01535`	PPR	Repeat	368	390	1.8e-91	294.9	PPR repeat
`XP_057780935.1`	Pfam	`PF23276`	TPR_24	Repeat	391	496	2.3e-33	115.6	Pentatricopeptide repeat-containing protein
`XP_057780935.1`	Pfam	`PF13812`	PPR_3	Repeat	396	444	1.9e-66	220.7	Pentatricopeptide repeat domain
`XP_057780935.1`	Pfam	`PF12854`	PPR_1	Repeat	397	429	3.1e-127	414.6	PPR repeat
`XP_057780935.1`	Pfam	`PF13041`	PPR_2	Repeat	400	449	1.6e-148	483.5	PPR repeat family
`XP_057780935.1`	Pfam	`PF01535`	PPR	Repeat	403	432	1.8e-91	294.9	PPR repeat
`XP_057780935.1`	Pfam	`PF13812`	PPR_3	Repeat	424	480	1.9e-66	220.7	Pentatricopeptide repeat domain
`XP_057780935.1`	Pfam	`PF12854`	PPR_1	Repeat	432	464	3.1e-127	414.6	PPR repeat
`XP_057780935.1`	Pfam	`PF13041`	PPR_2	Repeat	435	483	1.6e-148	483.5	PPR repeat family
`XP_057780935.1`	Pfam	`PF01535`	PPR	Repeat	438	468	1.8e-91	294.9	PPR repeat
`XP_057780935.1`	Pfam	`PF12854`	PPR_1	Repeat	466	497	3.1e-127	414.6	PPR repeat
`XP_057780935.1`	Pfam	`PF13041`	PPR_2	Repeat	470	518	1.6e-148	483.5	PPR repeat family
`XP_057780935.1`	Pfam	`PF01535`	PPR	Repeat	473	502	1.8e-91	294.9	PPR repeat
`XP_057780935.1`	Pfam	`PF23276`	TPR_24	Repeat	492	589	2.3e-33	115.6	Pentatricopeptide repeat-containing protein
`XP_057780935.1`	Pfam	`PF13812`	PPR_3	Repeat	494	548	1.9e-66	220.7	Pentatricopeptide repeat domain
`XP_057780935.1`	Pfam	`PF12854`	PPR_1	Repeat	501	534	3.1e-127	414.6	PPR repeat
`XP_057780935.1`	Pfam	`PF01535`	PPR	Repeat	508	537	1.8e-91	294.9	PPR repeat
`XP_057780935.1`	Pfam	`PF13041`	PPR_2	Repeat	512	554	1.6e-148	483.5	PPR repeat family
`XP_057780935.1`	Pfam	`PF13041`	PPR_2	Repeat	540	585	1.6e-148	483.5	PPR repeat family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057924952.1
TTATTTGAACTGAATTCTTATTATTTTATTTAAAACCCCAAAATATATACCAGTTAAAAAAAAAAAAACAGTGAAATACTTTCATAAAGCAAAATTTGAGCTAAGAGAGTGAGAAAACCTACAAAACTATTCCAAGAATGAGGTCGAACCACACCGCCATGTTTCTGGGAAGATTTTTGTCAAATTTTTCATCTAAATCCTCCACTTTTGCCATCGCTTCTCCACATTATCAATCATTTCTTGTACCCAGTTTTCATTTT...

CDS

1 records

下载 CDS FASTA

LOC130999429
ATGAGGTCGAACCACACCGCCATGTTTCTGGGAAGATTTTTGTCAAATTTTTCATCTAAATCCTCCACTTTTGCCATCGCTTCTCCACATTATCAATCATTTCTTGTACCCAGTTTTCATTTTGATAATGCCAGCTGCCAAATGAGACACTTCTCCGCCTATCCCAGATTCGATTTTGGATCTATACGTGAGCCCGATGATGCCGTCGCTCTATTCCGGGAGATGATGAGAACGCGGCCGCTCCCTTATGTTACTGTTTT...

Protein

1 records

下载 Protein FASTA

XP_057780935.1
MRSNHTAMFLGRFLSNFSSKSSTFAIASPHYQSFLVPSFHFDNASCQMRHFSAYPRFDFGSIREPDDAVALFREMMRTRPLPYVTVFNKLLSTVVKMQQNTLALRLFDEMLQRDVPINHYTLSIAIDCYCRLKLPDFGYAILGSFFKRGYEPDVVTFNTLVKGLLLVGRVPEAAKVLWKMSVYQLCEHTEHTYSTMINGLCKAGGALEAIDLLCLLEKEKEICKPNVYAYNAVIDGLCKEGKVDDALQLFSPLGDKGISP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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