Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G004772`

染色体: Chr08 坐标: 57040688-57041987 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G004772`
名称	SmilChr08G004772
描述	pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	57040688 - 57041987 / `+`

ID 对照

NCBI Gene ID	`LOC130999439`
GeneID	`130999439`
locus_tag	`-`
NCBI Name	`LOC130999439`
原始查询	`LOC130999439`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like
产物	pentatricopeptide repeat-containing protein At1g62930%2C chloroplastic-like
Arabidopsis	`AT1G62930` (RPF3) Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:842594] identity=39; qcov=0.959; evalue=4.24e-95; confidence=medium
Rice	`Os08g0107800` - identity=31; qcov=1.04; evalue=2.62e-72; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF23276 (TPR_24)
InterPro	-
eggNOG	-
NR	GeneID:130999439

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	0.80000	`XP_057780946.1`
2	Chloroplast	叶绿体	0.20000	`XP_057780946.1`
3	Nucleus	细胞核	0.00000	`XP_057780946.1`
4	Chromosome	染色体	0.00000	`XP_057780946.1`
5	Centromere	着丝粒	0.00000	`XP_057780946.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:57040732`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B70
`Chr8:57040751`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B109,B120,C64,D2
`Chr8:57040754`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B131
`Chr8:57040784`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A22,B118
`Chr8:57040805`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B61
`Chr8:57040819`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A8,B120,C28
`Chr8:57040871`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B133
`Chr8:57040876`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B10,B117,B37,C33
`Chr8:57040877`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B18
`Chr8:57040887`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B53,D10
`Chr8:57040934`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B103,B125,B25,B58
`Chr8:57040937`	`GT`	`G`	1bp_deletion	frameshift_variant	6	B52,B65,B70,B99,C18,C20

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780946.1

414 aa

207

414

PPR_3

PPR_1

PPR_2

TPR_24

PPR

PPR_1

PPR_2

PPR

PPR_3

PPR_1

PPR_2

PPR

TPR_24

PPR_3

PPR_1

PPR_2

PPR

PPR_3

PPR_1

PPR

TPR_24

PPR_3

PPR_1

PPR_2

PPR

PPR_3

PPR_1

PPR_2

PPR

PPR_3

PPR_1

PPR_2

PPR

PPR_1

PPR_2

PPR

PF13812 PPR_3 25-75 aa PF12854 PPR_1 28-56 aa PF13041 PPR_2 30-79 aa PF23276 TPR_24 32-123 aa PF01535 PPR 33-63 aa PF12854 PPR_1 61-93 aa PF13041 PPR_2 65-113 aa PF01535 PPR 68-96 aa PF13812 PPR_3 89-147 aa PF12854 PPR_1 98-129 aa PF13041 PPR_2 100-148 aa PF01535 PPR 103-131 aa PF23276 TPR_24 128-233 aa PF13812 PPR_3 132-183 aa PF12854 PPR_1 133-160 aa PF13041 PPR_2 135-184 aa PF01535 PPR 138-168 aa PF13812 PPR_3 158-216 aa PF12854 PPR_1 167-195 aa PF01535 PPR 173-195 aa PF23276 TPR_24 196-292 aa PF13812 PPR_3 201-249 aa PF12854 PPR_1 202-234 aa PF13041 PPR_2 205-253 aa PF01535 PPR 208-237 aa PF13812 PPR_3 229-285 aa PF12854 PPR_1 237-269 aa PF13041 PPR_2 240-288 aa PF01535 PPR 244-271 aa PF13812 PPR_3 297-351 aa PF12854 PPR_1 304-337 aa PF13041 PPR_2 308-357 aa PF01535 PPR 311-341 aa PF12854 PPR_1 339-371 aa PF13041 PPR_2 343-388 aa PF01535 PPR 346-376 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057780946.1`	Pfam	`PF13812`	PPR_3	Repeat	25	75	1.1e-56	189.4	Pentatricopeptide repeat domain
`XP_057780946.1`	Pfam	`PF12854`	PPR_1	Repeat	28	56	4.9e-105	343.6	PPR repeat
`XP_057780946.1`	Pfam	`PF13041`	PPR_2	Repeat	30	79	9.2e-128	417.0	PPR repeat family
`XP_057780946.1`	Pfam	`PF23276`	TPR_24	Repeat	32	123	1.1e-27	97.2	Pentatricopeptide repeat-containing protein
`XP_057780946.1`	Pfam	`PF01535`	PPR	Repeat	33	63	5.1e-69	224.5	PPR repeat
`XP_057780946.1`	Pfam	`PF12854`	PPR_1	Repeat	61	93	4.9e-105	343.6	PPR repeat
`XP_057780946.1`	Pfam	`PF13041`	PPR_2	Repeat	65	113	9.2e-128	417.0	PPR repeat family
`XP_057780946.1`	Pfam	`PF01535`	PPR	Repeat	68	96	5.1e-69	224.5	PPR repeat
`XP_057780946.1`	Pfam	`PF13812`	PPR_3	Repeat	89	147	1.1e-56	189.4	Pentatricopeptide repeat domain
`XP_057780946.1`	Pfam	`PF12854`	PPR_1	Repeat	98	129	4.9e-105	343.6	PPR repeat
`XP_057780946.1`	Pfam	`PF13041`	PPR_2	Repeat	100	148	9.2e-128	417.0	PPR repeat family
`XP_057780946.1`	Pfam	`PF01535`	PPR	Repeat	103	131	5.1e-69	224.5	PPR repeat
`XP_057780946.1`	Pfam	`PF23276`	TPR_24	Repeat	128	233	1.1e-27	97.2	Pentatricopeptide repeat-containing protein
`XP_057780946.1`	Pfam	`PF13812`	PPR_3	Repeat	132	183	1.1e-56	189.4	Pentatricopeptide repeat domain
`XP_057780946.1`	Pfam	`PF12854`	PPR_1	Repeat	133	160	4.9e-105	343.6	PPR repeat
`XP_057780946.1`	Pfam	`PF13041`	PPR_2	Repeat	135	184	9.2e-128	417.0	PPR repeat family
`XP_057780946.1`	Pfam	`PF01535`	PPR	Repeat	138	168	5.1e-69	224.5	PPR repeat
`XP_057780946.1`	Pfam	`PF13812`	PPR_3	Repeat	158	216	1.1e-56	189.4	Pentatricopeptide repeat domain
`XP_057780946.1`	Pfam	`PF12854`	PPR_1	Repeat	167	195	4.9e-105	343.6	PPR repeat
`XP_057780946.1`	Pfam	`PF01535`	PPR	Repeat	173	195	5.1e-69	224.5	PPR repeat
`XP_057780946.1`	Pfam	`PF23276`	TPR_24	Repeat	196	292	1.1e-27	97.2	Pentatricopeptide repeat-containing protein
`XP_057780946.1`	Pfam	`PF13812`	PPR_3	Repeat	201	249	1.1e-56	189.4	Pentatricopeptide repeat domain
`XP_057780946.1`	Pfam	`PF12854`	PPR_1	Repeat	202	234	4.9e-105	343.6	PPR repeat
`XP_057780946.1`	Pfam	`PF13041`	PPR_2	Repeat	205	253	9.2e-128	417.0	PPR repeat family
`XP_057780946.1`	Pfam	`PF01535`	PPR	Repeat	208	237	5.1e-69	224.5	PPR repeat
`XP_057780946.1`	Pfam	`PF13812`	PPR_3	Repeat	229	285	1.1e-56	189.4	Pentatricopeptide repeat domain
`XP_057780946.1`	Pfam	`PF12854`	PPR_1	Repeat	237	269	4.9e-105	343.6	PPR repeat
`XP_057780946.1`	Pfam	`PF13041`	PPR_2	Repeat	240	288	9.2e-128	417.0	PPR repeat family
`XP_057780946.1`	Pfam	`PF01535`	PPR	Repeat	244	271	5.1e-69	224.5	PPR repeat
`XP_057780946.1`	Pfam	`PF13812`	PPR_3	Repeat	297	351	1.1e-56	189.4	Pentatricopeptide repeat domain
`XP_057780946.1`	Pfam	`PF12854`	PPR_1	Repeat	304	337	4.9e-105	343.6	PPR repeat
`XP_057780946.1`	Pfam	`PF13041`	PPR_2	Repeat	308	357	9.2e-128	417.0	PPR repeat family
`XP_057780946.1`	Pfam	`PF01535`	PPR	Repeat	311	341	5.1e-69	224.5	PPR repeat
`XP_057780946.1`	Pfam	`PF12854`	PPR_1	Repeat	339	371	4.9e-105	343.6	PPR repeat
`XP_057780946.1`	Pfam	`PF13041`	PPR_2	Repeat	343	388	9.2e-128	417.0	PPR repeat family
`XP_057780946.1`	Pfam	`PF01535`	PPR	Repeat	346	376	5.1e-69	224.5	PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057924963.1
CAATGAACAGACGTATAGTACTATGATTAATGGGATATGCAAAGCTTTAGGTACTCTCCATGCGCTGGAATTGCTCTGCTTATTGGAAAAAGAAAAGGGAATCTGCAAACCCAATATCTATTCTTACAATGCAGTCATTGATGGTCTATGCAACGAAGGAAAGGTAGACGATGCTCTCCAACTCTTCTCCTCTTTGGGTGATAAGGGGATTTCACCCAATGTTGTGACATATAATTCAATAATTGAGGGGTTATGCAATA...

CDS

1 records

下载 CDS FASTA

LOC130999439
ATGATTAATGGGATATGCAAAGCTTTAGGTACTCTCCATGCGCTGGAATTGCTCTGCTTATTGGAAAAAGAAAAGGGAATCTGCAAACCCAATATCTATTCTTACAATGCAGTCATTGATGGTCTATGCAACGAAGGAAAGGTAGACGATGCTCTCCAACTCTTCTCCTCTTTGGGTGATAAGGGGATTTCACCCAATGTTGTGACATATAATTCAATAATTGAGGGGTTATGCAATAGGAGAAGAATGGACGAGGCTCA...

Protein

1 records

下载 Protein FASTA

XP_057780946.1
MINGICKALGTLHALELLCLLEKEKGICKPNIYSYNAVIDGLCNEGKVDDALQLFSSLGDKGISPNVVTYNSIIEGLCNRRRMDEAQDILKKMIADKVCPNVVTCNIFVTAWCKDGKVQEAEHMLVSMKEIDVQPNIVTYSALINGYCMQGKMNEAVRIFQLAVNSGIKPDIVSYNSLMNGYCKKGLVDEVSRLFTIIPAKRLERNVVSYNIMLEALFRKGRCEDGLNLFKEMQALGLSPHVKTYNILVHGLCSAHRITE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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