Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G004791`

染色体: Chr08 坐标: 57213125-57240920 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G004791`
名称	SmilChr08G004791
描述	pentatricopeptide repeat-containing protein At1g63330-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	57213125 - 57240920 / `+`

ID 对照

NCBI Gene ID	`LOC130999445`
GeneID	`130999445`
locus_tag	`-`
NCBI Name	`LOC130999445`
原始查询	`LOC130999445`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pentatricopeptide repeat-containing protein At1g63330-like
产物	pentatricopeptide repeat-containing protein At1g63330-like
Arabidopsis	`AT1G12300` (AT1G12300) Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837784] identity=33.2; qcov=0.934; evalue=1.84e-114; confidence=low
Rice	`Os10g0495200` (Rf4) - identity=29.1; qcov=0.967; evalue=1.17e-93; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro	-
eggNOG	-
NR	GeneID:130999445

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	0.80000	`XP_057780954.1`
2	Chloroplast	叶绿体	0.20000	`XP_057780954.1`
3	Nucleus	细胞核	0.00000	`XP_057780954.1`
4	Chromosome	染色体	0.00000	`XP_057780954.1`
5	Centromere	着丝粒	0.00000	`XP_057780954.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:57213253`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	D10,D4
`Chr8:57213254`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A22,B119
`Chr8:57213256`	`TG`	`T`	1bp_deletion	frameshift_variant	3	A22,B119,B77
`Chr8:57213256`	`TG`	`T`	1bp_deletion	CDS_variant	3	A22,B119,B77
`Chr8:57213285`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B113,C8,D2,D6
`Chr8:57213296`	`CTG`	`C`	2bp_deletion	frameshift_variant	3	B106,B60,C2
`Chr8:57213296`	`CTG`	`C`	2bp_deletion	CDS_variant	3	B106,B60,C2
`Chr8:57213309`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B59,B71,B94,C44
`Chr8:57213365`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C76,D8
`Chr8:57213366`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B133,C1
`Chr8:57213387`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B119,B77
`Chr8:57213395`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B91,C37

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780954.1

665 aa

332

665

PPR_3

PPR

PPR_long

TPR_24

PPR_3

PPR_1

PPR_2

PPR

PPR_1

PPR

PPR_2

PPR_3

PPR_1

PPR_2

PPR

PPR_2

PPR

PPR_long

PPR_3

PPR_1

PPR

PPR_2

PPR_1

PPR_2

PPR

PPR_3

PPR_1

PPR_2

PPR

PPR_2

PPR

PPR_3

PPR_1

PPR

PPR_2

PPR_3

PPR_1

PPR_2

PPR

PPR_3

PPR_2

PPR

PF13812 PPR_3 60-103 aa PF01535 PPR 185-209 aa PF17177 PPR_long 198-302 aa PF23276 TPR_24 198-306 aa PF13812 PPR_3 208-259 aa PF12854 PPR_1 209-241 aa PF13041 PPR_2 212-260 aa PF01535 PPR 216-244 aa PF12854 PPR_1 244-276 aa PF01535 PPR 250-280 aa PF13041 PPR_2 255-295 aa PF13812 PPR_3 271-326 aa PF12854 PPR_1 278-307 aa PF13041 PPR_2 282-330 aa PF01535 PPR 285-315 aa PF13041 PPR_2 318-366 aa PF01535 PPR 321-347 aa PF17177 PPR_long 336-450 aa PF13812 PPR_3 341-398 aa PF12854 PPR_1 350-381 aa PF01535 PPR 355-385 aa PF13041 PPR_2 356-400 aa PF12854 PPR_1 383-415 aa PF13041 PPR_2 387-436 aa PF01535 PPR 390-420 aa PF13812 PPR_3 411-466 aa PF12854 PPR_1 418-450 aa PF13041 PPR_2 422-454 aa PF01535 PPR 425-451 aa PF13041 PPR_2 458-506 aa PF01535 PPR 460-487 aa PF13812 PPR_3 480-537 aa PF12854 PPR_1 490-521 aa PF01535 PPR 496-524 aa PF13041 PPR_2 502-541 aa PF13812 PPR_3 517-572 aa PF12854 PPR_1 523-553 aa PF13041 PPR_2 527-562 aa PF01535 PPR 530-560 aa PF13812 PPR_3 551-606 aa PF13041 PPR_2 562-605 aa PF01535 PPR 566-595 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057780954.1`	Pfam	`PF13812`	PPR_3	Repeat	60	103	3.8e-66	219.8	Pentatricopeptide repeat domain
`XP_057780954.1`	Pfam	`PF01535`	PPR	Repeat	185	209	6.7e-97	311.9	PPR repeat
`XP_057780954.1`	Pfam	`PF17177`	PPR_long	Repeat	198	302	8e-31	107.8	Pentacotripeptide-repeat region of PRORP
`XP_057780954.1`	Pfam	`PF23276`	TPR_24	Repeat	198	306	1.6e-31	109.7	Pentatricopeptide repeat-containing protein
`XP_057780954.1`	Pfam	`PF13812`	PPR_3	Repeat	208	259	3.8e-66	219.8	Pentatricopeptide repeat domain
`XP_057780954.1`	Pfam	`PF12854`	PPR_1	Repeat	209	241	1.2e-121	396.8	PPR repeat
`XP_057780954.1`	Pfam	`PF13041`	PPR_2	Repeat	212	260	1.5e-154	502.8	PPR repeat family
`XP_057780954.1`	Pfam	`PF01535`	PPR	Repeat	216	244	6.7e-97	311.9	PPR repeat
`XP_057780954.1`	Pfam	`PF12854`	PPR_1	Repeat	244	276	1.2e-121	396.8	PPR repeat
`XP_057780954.1`	Pfam	`PF01535`	PPR	Repeat	250	280	6.7e-97	311.9	PPR repeat
`XP_057780954.1`	Pfam	`PF13041`	PPR_2	Repeat	255	295	1.5e-154	502.8	PPR repeat family
`XP_057780954.1`	Pfam	`PF13812`	PPR_3	Repeat	271	326	3.8e-66	219.8	Pentatricopeptide repeat domain
`XP_057780954.1`	Pfam	`PF12854`	PPR_1	Repeat	278	307	1.2e-121	396.8	PPR repeat
`XP_057780954.1`	Pfam	`PF13041`	PPR_2	Repeat	282	330	1.5e-154	502.8	PPR repeat family
`XP_057780954.1`	Pfam	`PF01535`	PPR	Repeat	285	315	6.7e-97	311.9	PPR repeat
`XP_057780954.1`	Pfam	`PF13041`	PPR_2	Repeat	318	366	1.5e-154	502.8	PPR repeat family
`XP_057780954.1`	Pfam	`PF01535`	PPR	Repeat	321	347	6.7e-97	311.9	PPR repeat
`XP_057780954.1`	Pfam	`PF17177`	PPR_long	Repeat	336	450	8e-31	107.8	Pentacotripeptide-repeat region of PRORP
`XP_057780954.1`	Pfam	`PF13812`	PPR_3	Repeat	341	398	3.8e-66	219.8	Pentatricopeptide repeat domain
`XP_057780954.1`	Pfam	`PF12854`	PPR_1	Repeat	350	381	1.2e-121	396.8	PPR repeat
`XP_057780954.1`	Pfam	`PF01535`	PPR	Repeat	355	385	6.7e-97	311.9	PPR repeat
`XP_057780954.1`	Pfam	`PF13041`	PPR_2	Repeat	356	400	1.5e-154	502.8	PPR repeat family
`XP_057780954.1`	Pfam	`PF12854`	PPR_1	Repeat	383	415	1.2e-121	396.8	PPR repeat
`XP_057780954.1`	Pfam	`PF13041`	PPR_2	Repeat	387	436	1.5e-154	502.8	PPR repeat family
`XP_057780954.1`	Pfam	`PF01535`	PPR	Repeat	390	420	6.7e-97	311.9	PPR repeat
`XP_057780954.1`	Pfam	`PF13812`	PPR_3	Repeat	411	466	3.8e-66	219.8	Pentatricopeptide repeat domain
`XP_057780954.1`	Pfam	`PF12854`	PPR_1	Repeat	418	450	1.2e-121	396.8	PPR repeat
`XP_057780954.1`	Pfam	`PF13041`	PPR_2	Repeat	422	454	1.5e-154	502.8	PPR repeat family
`XP_057780954.1`	Pfam	`PF01535`	PPR	Repeat	425	451	6.7e-97	311.9	PPR repeat
`XP_057780954.1`	Pfam	`PF13041`	PPR_2	Repeat	458	506	1.5e-154	502.8	PPR repeat family
`XP_057780954.1`	Pfam	`PF01535`	PPR	Repeat	460	487	6.7e-97	311.9	PPR repeat
`XP_057780954.1`	Pfam	`PF13812`	PPR_3	Repeat	480	537	3.8e-66	219.8	Pentatricopeptide repeat domain
`XP_057780954.1`	Pfam	`PF12854`	PPR_1	Repeat	490	521	1.2e-121	396.8	PPR repeat
`XP_057780954.1`	Pfam	`PF01535`	PPR	Repeat	496	524	6.7e-97	311.9	PPR repeat
`XP_057780954.1`	Pfam	`PF13041`	PPR_2	Repeat	502	541	1.5e-154	502.8	PPR repeat family
`XP_057780954.1`	Pfam	`PF13812`	PPR_3	Repeat	517	572	3.8e-66	219.8	Pentatricopeptide repeat domain
`XP_057780954.1`	Pfam	`PF12854`	PPR_1	Repeat	523	553	1.2e-121	396.8	PPR repeat
`XP_057780954.1`	Pfam	`PF13041`	PPR_2	Repeat	527	562	1.5e-154	502.8	PPR repeat family
`XP_057780954.1`	Pfam	`PF01535`	PPR	Repeat	530	560	6.7e-97	311.9	PPR repeat
`XP_057780954.1`	Pfam	`PF13812`	PPR_3	Repeat	551	606	3.8e-66	219.8	Pentatricopeptide repeat domain
`XP_057780954.1`	Pfam	`PF13041`	PPR_2	Repeat	562	605	1.5e-154	502.8	PPR repeat family
`XP_057780954.1`	Pfam	`PF01535`	PPR	Repeat	566	595	6.7e-97	311.9	PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XR_009093520.1
CCCAAAATTGAACGAGAGAACGCACTGTTACAAGAAATCGCTCAACTTTTAGATACCATTCTTCAGATCCAATCACAAACAAAAAGAAAAGAGATCCAATCTCACCGATTAAGGATGATGAGCAGAAGGGCTGCTGTTTCTGCAATTGATCTCATTCATGGAAGAGGTTTTCTGTCTCAGAAATCGGGTATTCTCTCTCCTCCATTCTCTCTCTTCTCTTCCAAGGCTTTTCAACCTAAGCGGTCCAGAATCGATTTCAG...

XR_009093519.1
CCCAAAATTGAACGAGAGAACGCACTGTTACAAGAAATCGCTCAACTTTTAGATACCATTCTTCAGATCCAATCACAAACAAAAAGAAAAGAGATCCAATCTCACCGATTAAGGATGATGAGCAGAAGGGCTGCTGTTTCTGCAATTGATCTCATTCATGGAAGAGGTTTTCTGTCTCAGAAATCGGGTATTCTCTCTCCTCCATTCTCTCTCTTCTCTTCCAAGGCTTTTCAACCTAAGCGGTCCAGAATCGATTTCAG...

CDS

1 records

下载 CDS FASTA

LOC130999445
ATGATGAGCAGAAGGGCTGCTGTTTCTGCAATTGATCTCATTCATGGAAGAGGTTTTCTGTCTCAGAAATCGGGTATTCTCTCTCCTCCATTCTCTCTCTTCTCTTCCAAGGCTTTTCAACCTAAGCGGTCCAGAATCGATTTCAGTTGTGTTAAAGAATTAAATGATTCTATTGAATTGTTTCAAAAAATGAAGAGTATGCGGCCGGAGCCTTCTATTTACATGTACAGCAAGCTTATGAGTGTTACTGCAAACATTGA...

Protein

1 records

下载 Protein FASTA

XP_057780954.1
MMSRRAAVSAIDLIHGRGFLSQKSGILSPPFSLFSSKAFQPKRSRIDFSCVKELNDSIELFQKMKSMRPEPSIYMYSKLMSVTANIEQYSFALYVFDEMLRMGVPVDTHTMTIAVNCCCLLKDINSGFSLMGFFFKIGYEPNVVTISTLIKGFFFVEKEAEAVKLFEKVLNLNLCVPDDVMILQMIDGLCKAGQVIAAHDWLHRLEGSGRSPNIMAYNALIHGLCKEGRMKEAGNVLESMTQQNVSPNVVTYSVVINGFC...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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