当前解析结果
SmilChr08G004792| 统一新 Gene ID | SmilChr08G004792 |
|---|---|
| 名称 | SmilChr08G004792 |
| 描述 | putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 57221244 - 57222305 / + |
| NCBI Gene ID | LOC130999455 |
|---|---|
| GeneID | 130999455 |
| locus_tag | - |
| NCBI Name | LOC130999455 |
| 原始查询 | LOC130999455 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial |
| 产物 | putative pentatricopeptide repeat-containing protein At1g12700%2C mitochondrial |
| Arabidopsis | AT1G12700 (RPF1)RNA processing FACTOR [Source:NCBI gene (formerly Entrezgene);Acc:837825] identity=38; qcov=0.72; evalue=1.99e-42; confidence=medium |
| Rice | Os04g0488500- identity=37.2; qcov=0.56; evalue=1.08e-23; confidence=medium |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF01535 (PPR); PF12854 (PPR_1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999455 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057780965.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057780965.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057780965.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057780965.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057780965.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:57221254 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B35 |
Chr8:57221317 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B131,B78,B91,D3,D6 |
Chr8:57221455 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C64 |
Chr8:57221463 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B79 |
Chr8:57221538 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A9,B95,C33,D7 |
Chr8:57221569 |
G |
GAA |
2bp_insertion | frameshift_variant | 13 | A6,A9,B10,B131,B132,B22,B29,B37,B75,B90,B92,B99,C33 |
Chr8:57221571 |
ATT |
A |
2bp_deletion | frameshift_variant | 12 | A9,B10,B131,B132,B22,B29,B37,B75,B90,B92,B99,C33 |
Chr8:57221603 |
AAG |
A |
2bp_deletion | frameshift_variant | 10 | A3,B127,B47,B65,B93,B98,C25,C3,C75,C79 |
Chr8:57221606 |
C |
CTG |
2bp_insertion | frameshift_variant | 10 | A3,B127,B47,B65,B93,B98,C25,C3,C75,C79 |
Chr8:57221627 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C1 |
Chr8:57221680 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B132 |
Chr8:57221702 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B129 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057780965.1PF01535
PPR 123-149 aa
PF01535
PPR 190-213 aa
PF12854
PPR_1 221-238 aa
PF01535
PPR 227-253 aa
PF12854
PPR_1 258-286 aa
PF01535
PPR 263-287 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057780965.1 |
Pfam | PF01535 |
PPR | Repeat | 123 | 149 | 8.4e-20 | 70.3 | PPR repeat |
XP_057780965.1 |
Pfam | PF01535 |
PPR | Repeat | 190 | 213 | 8.4e-20 | 70.3 | PPR repeat |
XP_057780965.1 |
Pfam | PF12854 |
PPR_1 | Repeat | 221 | 238 | 1.4e-27 | 95.8 | PPR repeat |
XP_057780965.1 |
Pfam | PF01535 |
PPR | Repeat | 227 | 253 | 8.4e-20 | 70.3 | PPR repeat |
XP_057780965.1 |
Pfam | PF12854 |
PPR_1 | Repeat | 258 | 286 | 1.4e-27 | 95.8 | PPR repeat |
XP_057780965.1 |
Pfam | PF01535 |
PPR | Repeat | 263 | 287 | 8.4e-20 | 70.3 | PPR repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。