Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G004786

染色体: Chr08 坐标: 57175126-57176578 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G004786
名称SmilChr08G004786
描述uncharacterized protein At5g48480
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向57175126 - 57176578 / +

ID 对照

NCBI Gene IDLOC130999457
GeneID130999457
locus_tag-
NCBI NameLOC130999457
原始查询LOC130999457

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述Lactoylglutathione lyase / glyoxalase I family protein [Source:NCBI gene (formerly Entrezgene);Acc:834903]; symbol=AT5G48480; hit=AT5G48480; species=arabidopsis; confidence=medium
产物Lactoylglutathione lyase / glyoxalase I family protein [Source:NCBI gene (formerly Entrezgene);Acc:834903]; symbol=AT5G48480; hit=AT5G48480; species=arabidopsis; confidence=medium
ArabidopsisAT5G48480 (AT5G48480)
Lactoylglutathione lyase / glyoxalase I family protein [Source:NCBI gene (formerly Entrezgene);Acc:834903]
identity=48.4; qcov=0.952; evalue=6.38e-30; confidence=medium
Rice-
-
GO-
KEGG-
PfamPF00903 (Glyoxalase); PF18029 (Glyoxalase_6); PF22650 (At5g48480-like_C); PF22656 (At5g48480-like_N)
InterPro-
eggNOG-
NRGeneID:130999457

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytosol 细胞质基质 1.00000 XP_057780967.1
2 Cytoplasm 细胞质 0.80000 XP_057780967.1
3 Nucleus 细胞核 0.00000 XP_057780967.1
4 Chromosome 染色体 0.00000 XP_057780967.1
5 Centromere 着丝粒 0.00000 XP_057780967.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:57175347 G A EMS_canonical_SNV CDS_variant 1 B62
Chr8:57175413 G A EMS_canonical_SNV CDS_variant 2 B140,B33
Chr8:57175515 G A EMS_canonical_SNV CDS_variant 2 A22,B119
Chr8:57175542 C T EMS_canonical_SNV CDS_variant 2 C19,C38
Chr8:57176211 G A EMS_canonical_SNV CDS_variant 1 B76
Chr8:57176214 C T EMS_canonical_SNV CDS_variant 3 B104,B97,C26
Chr8:57176235 C T EMS_canonical_SNV CDS_variant 1 B112

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057780967.1
165 aa
N
1
82
165
At5g48480-like_N
Glyoxalase_6
Glyoxalase
At5g48480-like_C
C
PF22656 At5g48480-like_N 28-86 aa PF18029 Glyoxalase_6 28-153 aa PF00903 Glyoxalase 35-151 aa PF22650 At5g48480-like_C 104-152 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057780967.1 Pfam PF22656 At5g48480-like_N Domain 28 86 4e-32 110.5 Glyoxalase At5g48480-like, N-terminal domain
XP_057780967.1 Pfam PF18029 Glyoxalase_6 Domain 28 153 1.2e-05 26.7 Glyoxalase-like domain
XP_057780967.1 Pfam PF00903 Glyoxalase Domain 35 151 5.7e-06 27.4 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
XP_057780967.1 Pfam PF22650 At5g48480-like_C Domain 104 152 2.5e-12 47.7 Glyoxalase At5g48480-like C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057924984.1
AGCTTCCTCGCTTCCTATAAATCTAGCACCACGCTTTTGGTCTTCTTAAACTTCCATTATCCATTTACATTTTCAATAACTCCCTCTTTCTCTCTCTACGTTCTCCTCCGCGCACACGTTTTCTCTCTCTTAGGGTTTCAACACGCTTTGAGCATGGCGCAGGAGGCACAAGCAGTTTCCGGAGCTGAGAACGGGGCCAAGGCTTCTCAGGTGGTGTTCACGGCGGCGAAGCCGTGGCTGGTGGTGGAGGCTCCGAAGGC...

CDS

1 records

下载 CDS FASTA
LOC130999457
ATGGCGCAGGAGGCACAAGCAGTTTCCGGAGCTGAGAACGGGGCCAAGGCTTCTCAGGTGGTGTTCACGGCGGCGAAGCCGTGGCTGGTGGTGGAGGCTCCGAAGGCGAACGACGCCGTGCAGTTCTACAAGGCGGCGTTTGGAGCTGAGGAGCTGAGCCGAGTGAATGATCCGAAGAGGAAGGCAGAGCAGGAGCTTCCTCTCATTCGCTCCGCCGAGCTGAAGATTGGATCCTCGGTTTTCGTTGTTTCGGACCTCAC...

Protein

1 records

下载 Protein FASTA
XP_057780967.1
MAQEAQAVSGAENGAKASQVVFTAAKPWLVVEAPKANDAVQFYKAAFGAEELSRVNDPKRKAEQELPLIRSAELKIGSSVFVVSDLTDDSSSPLKSAVSGLVFCLETEAVEAAIAKAVAAGAVSEDEVAEGEGACCGGRVGKVKDPYGNVWLICSPAKKCGDVAA

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器