Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G004795`

染色体: Chr08 坐标: 57252602-57256178 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G004795`
名称	SmilChr08G004795
描述	putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	57252602 - 57256178 / `+`

ID 对照

NCBI Gene ID	`LOC130999462`
GeneID	`130999462`
locus_tag	`-`
NCBI Name	`LOC130999462`
原始查询	`LOC130999462`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial
产物	putative pentatricopeptide repeat-containing protein At1g12700%2C mitochondrial
Arabidopsis	`AT1G12700` (RPF1) RNA processing FACTOR [Source:NCBI gene (formerly Entrezgene);Acc:837825] identity=36.7; qcov=0.938; evalue=6.17e-134; confidence=medium
Rice	`Os08g0107800` - identity=30.9; qcov=0.928; evalue=6.21e-88; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro	-
eggNOG	-
NR	GeneID:130999462

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057780972.1`
2	Chloroplast	叶绿体	0.20000	`XP_057780972.1`
3	Nucleus	细胞核	0.00000	`XP_057780972.1`
4	Chromosome	染色体	0.00000	`XP_057780972.1`
5	Centromere	着丝粒	0.00000	`XP_057780972.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:57252730`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C76,D8
`Chr8:57252791`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A11,B21,C73,C78,C82
`Chr8:57252823`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A8,B124,B24,B5,C60
`Chr8:57252824`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B122,B92,C73,D1
`Chr8:57252853`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A19,B34,B76
`Chr8:57252873`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A16,B55,B6,C44
`Chr8:57252970`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B10,B118,B20,B37,B95
`Chr8:57253032`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B41
`Chr8:57253041`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B121,B60
`Chr8:57253102`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B120,B16,B26
`Chr8:57253105`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C76,D8
`Chr8:57253183`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C15

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780972.1

608 aa

304

608

PPR_2

PPR

PPR_1

PPR_2

PPR

PPR_1

PPR

PPR_3

PPR_1

PPR_2

PPR

PPR_1

PPR

PPR_2

PPR

PPR_3

PPR_1

PPR_2

PPR

PPR_1

PPR_3

PPR_2

PPR

PPR_3

PPR_1

PPR

TPR_24

PPR_2

PPR_1

PPR_2

PPR

PPR_long

TPR_24

PPR_3

PPR_1

PPR_2

PPR

PF13041 PPR_2 84-128 aa PF01535 PPR 87-110 aa PF12854 PPR_1 145-174 aa PF13041 PPR_2 149-199 aa PF01535 PPR 152-176 aa PF12854 PPR_1 183-210 aa PF01535 PPR 189-215 aa PF13812 PPR_3 217-267 aa PF12854 PPR_1 220-248 aa PF13041 PPR_2 222-268 aa PF01535 PPR 226-255 aa PF12854 PPR_1 253-285 aa PF01535 PPR 260-288 aa PF13041 PPR_2 294-340 aa PF01535 PPR 295-323 aa PF13812 PPR_3 320-374 aa PF12854 PPR_1 325-352 aa PF13041 PPR_2 327-376 aa PF01535 PPR 331-359 aa PF01535 PPR 365-387 aa PF12854 PPR_1 395-426 aa PF13812 PPR_3 395-442 aa PF13041 PPR_2 398-445 aa PF01535 PPR 400-427 aa PF13812 PPR_3 421-477 aa PF12854 PPR_1 430-461 aa PF01535 PPR 436-465 aa PF23276 TPR_24 437-513 aa PF13041 PPR_2 441-480 aa PF12854 PPR_1 463-494 aa PF13041 PPR_2 467-516 aa PF01535 PPR 470-500 aa PF17177 PPR_long 484-600 aa PF23276 TPR_24 490-587 aa PF13812 PPR_3 491-545 aa PF12854 PPR_1 498-530 aa PF13041 PPR_2 502-551 aa PF01535 PPR 505-535 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057780972.1`	Pfam	`PF13041`	PPR_2	Repeat	84	128	6e-134	436.8	PPR repeat family
`XP_057780972.1`	Pfam	`PF01535`	PPR	Repeat	87	110	1.2e-82	267.2	PPR repeat
`XP_057780972.1`	Pfam	`PF12854`	PPR_1	Repeat	145	174	3.2e-114	373.0	PPR repeat
`XP_057780972.1`	Pfam	`PF13041`	PPR_2	Repeat	149	199	6e-134	436.8	PPR repeat family
`XP_057780972.1`	Pfam	`PF01535`	PPR	Repeat	152	176	1.2e-82	267.2	PPR repeat
`XP_057780972.1`	Pfam	`PF12854`	PPR_1	Repeat	183	210	3.2e-114	373.0	PPR repeat
`XP_057780972.1`	Pfam	`PF01535`	PPR	Repeat	189	215	1.2e-82	267.2	PPR repeat
`XP_057780972.1`	Pfam	`PF13812`	PPR_3	Repeat	217	267	4.3e-63	210.0	Pentatricopeptide repeat domain
`XP_057780972.1`	Pfam	`PF12854`	PPR_1	Repeat	220	248	3.2e-114	373.0	PPR repeat
`XP_057780972.1`	Pfam	`PF13041`	PPR_2	Repeat	222	268	6e-134	436.8	PPR repeat family
`XP_057780972.1`	Pfam	`PF01535`	PPR	Repeat	226	255	1.2e-82	267.2	PPR repeat
`XP_057780972.1`	Pfam	`PF12854`	PPR_1	Repeat	253	285	3.2e-114	373.0	PPR repeat
`XP_057780972.1`	Pfam	`PF01535`	PPR	Repeat	260	288	1.2e-82	267.2	PPR repeat
`XP_057780972.1`	Pfam	`PF13041`	PPR_2	Repeat	294	340	6e-134	436.8	PPR repeat family
`XP_057780972.1`	Pfam	`PF01535`	PPR	Repeat	295	323	1.2e-82	267.2	PPR repeat
`XP_057780972.1`	Pfam	`PF13812`	PPR_3	Repeat	320	374	4.3e-63	210.0	Pentatricopeptide repeat domain
`XP_057780972.1`	Pfam	`PF12854`	PPR_1	Repeat	325	352	3.2e-114	373.0	PPR repeat
`XP_057780972.1`	Pfam	`PF13041`	PPR_2	Repeat	327	376	6e-134	436.8	PPR repeat family
`XP_057780972.1`	Pfam	`PF01535`	PPR	Repeat	331	359	1.2e-82	267.2	PPR repeat
`XP_057780972.1`	Pfam	`PF01535`	PPR	Repeat	365	387	1.2e-82	267.2	PPR repeat
`XP_057780972.1`	Pfam	`PF12854`	PPR_1	Repeat	395	426	3.2e-114	373.0	PPR repeat
`XP_057780972.1`	Pfam	`PF13812`	PPR_3	Repeat	395	442	4.3e-63	210.0	Pentatricopeptide repeat domain
`XP_057780972.1`	Pfam	`PF13041`	PPR_2	Repeat	398	445	6e-134	436.8	PPR repeat family
`XP_057780972.1`	Pfam	`PF01535`	PPR	Repeat	400	427	1.2e-82	267.2	PPR repeat
`XP_057780972.1`	Pfam	`PF13812`	PPR_3	Repeat	421	477	4.3e-63	210.0	Pentatricopeptide repeat domain
`XP_057780972.1`	Pfam	`PF12854`	PPR_1	Repeat	430	461	3.2e-114	373.0	PPR repeat
`XP_057780972.1`	Pfam	`PF01535`	PPR	Repeat	436	465	1.2e-82	267.2	PPR repeat
`XP_057780972.1`	Pfam	`PF23276`	TPR_24	Repeat	437	513	9e-33	113.7	Pentatricopeptide repeat-containing protein
`XP_057780972.1`	Pfam	`PF13041`	PPR_2	Repeat	441	480	6e-134	436.8	PPR repeat family
`XP_057780972.1`	Pfam	`PF12854`	PPR_1	Repeat	463	494	3.2e-114	373.0	PPR repeat
`XP_057780972.1`	Pfam	`PF13041`	PPR_2	Repeat	467	516	6e-134	436.8	PPR repeat family
`XP_057780972.1`	Pfam	`PF01535`	PPR	Repeat	470	500	1.2e-82	267.2	PPR repeat
`XP_057780972.1`	Pfam	`PF17177`	PPR_long	Repeat	484	600	2.5e-26	93.1	Pentacotripeptide-repeat region of PRORP
`XP_057780972.1`	Pfam	`PF23276`	TPR_24	Repeat	490	587	9e-33	113.7	Pentatricopeptide repeat-containing protein
`XP_057780972.1`	Pfam	`PF13812`	PPR_3	Repeat	491	545	4.3e-63	210.0	Pentatricopeptide repeat domain
`XP_057780972.1`	Pfam	`PF12854`	PPR_1	Repeat	498	530	3.2e-114	373.0	PPR repeat
`XP_057780972.1`	Pfam	`PF13041`	PPR_2	Repeat	502	551	6e-134	436.8	PPR repeat family
`XP_057780972.1`	Pfam	`PF01535`	PPR	Repeat	505	535	1.2e-82	267.2	PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057924989.1
CATAAACCTCTAAAATTTTGTTATCTGCAAAACCCTCGAAAGAAAGAGTGAGAATGAGGCGGAATCACGCTGCCATGATTTTGGGAAGAATTGTCTCCAATTCTTCTTTCAATTCCTCCACTTCTCTACATTATCAATCATTTCTTGTAAAACCCAGATTCAATTTTGGTAATGTCAGCTGCCAAATTAGATACTTCTACGCCAAACCCAGATTCGATTTCGGATCTATGCGTGATGCGGATGAAGCCATCGCTCTATTT...

CDS

1 records

下载 CDS FASTA

LOC130999462
ATGAGGCGGAATCACGCTGCCATGATTTTGGGAAGAATTGTCTCCAATTCTTCTTTCAATTCCTCCACTTCTCTACATTATCAATCATTTCTTGTAAAACCCAGATTCAATTTTGGTAATGTCAGCTGCCAAATTAGATACTTCTACGCCAAACCCAGATTCGATTTCGGATCTATGCGTGATGCGGATGAAGCCATCGCTCTATTTCGGGAGATGATGAGAACGAAGCCGCTTCCTTCTGTTATTGATTTCAGGAAATT...

Protein

1 records

下载 Protein FASTA

XP_057780972.1
MRRNHAAMILGRIVSNSSFNSSTSLHYQSFLVKPRFNFGNVSCQIRYFYAKPRFDFGSMRDADEAIALFREMMRTKPLPSVIDFRKLLSAVVKMKQYSLALHLFDEMLQRNAPVDHYTLSIAIDCYCRQKRPDFGFAILGIFFKRGYDPDVVTFTTLIKGLLLVGRIPEATKVLWKLLVYRLCEPNEQTYSTMINGICKAGGTLHALELLCLLEKEKGICKPDVFAYNAVIDGLCKDGKLDDALQLFSTLGDKGISPTVV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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