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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G004808

染色体: Chr08 坐标: 57399121-57401574 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G004808
名称SmilChr08G004808
描述putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向57399121 - 57401574 / +

ID 对照

NCBI Gene IDLOC130999470
GeneID130999470
locus_tag-
NCBI NameLOC130999470
原始查询LOC130999470

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial
产物putative pentatricopeptide repeat-containing protein At1g12700%2C mitochondrial
ArabidopsisAT1G62670 (RPF2)
rna processing factor 2 [Source:NCBI gene (formerly Entrezgene);Acc:842564]
identity=36; qcov=0.919; evalue=9.86e-131; confidence=medium
RiceOs10g0495200 (Rf4)
-
identity=32.9; qcov=0.881; evalue=1.12e-111; confidence=low
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:130999470

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 0.80000 XP_057780983.1
2 Chloroplast 叶绿体 0.20000 XP_057780983.1
3 Nucleus 细胞核 0.00000 XP_057780983.1
4 Chromosome 染色体 0.00000 XP_057780983.1
5 Centromere 着丝粒 0.00000 XP_057780983.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:57399399 G A EMS_canonical_SNV CDS_variant 1 D6
Chr8:57399443 C T EMS_canonical_SNV CDS_variant 2 C63,C67
Chr8:57399491 AT A 1bp_deletion frameshift_variant 5 A20,B76,B90,C67,D1
Chr8:57399491 AT A 1bp_deletion CDS_variant 5 A20,B76,B90,C67,D1
Chr8:57399562 G A EMS_canonical_SNV CDS_variant 3 B11,B12,C30
Chr8:57399567 C T EMS_canonical_SNV CDS_variant 4 B11,B12,C30,C64
Chr8:57399570 C T EMS_canonical_SNV CDS_variant 4 B11,B12,C30,C64
Chr8:57399590 G A EMS_canonical_SNV CDS_variant 3 B11,B12,C30
Chr8:57399706 CA C 1bp_deletion frameshift_variant 1 B63
Chr8:57399706 CA C 1bp_deletion CDS_variant 1 B63
Chr8:57399763 C T EMS_canonical_SNV stop_gained 1 B22
Chr8:57399763 C T EMS_canonical_SNV CDS_variant 1 B22

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780983.1
675 aa
N
1
338
675
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_1
PPR_2
TPR_24
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR
PPR_1
PPR_3
PPR_2
PPR
PPR_1
PPR
PPR_2
TPR_24
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR
PPR_2
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
C
PF13041 PPR_2 76-125 aa PF01535 PPR 81-107 aa PF12854 PPR_1 142-173 aa PF13041 PPR_2 146-196 aa PF01535 PPR 149-174 aa PF12854 PPR_1 180-207 aa PF13041 PPR_2 182-233 aa PF01535 PPR 185-211 aa PF12854 PPR_1 217-245 aa PF13041 PPR_2 219-268 aa PF23276 TPR_24 221-310 aa PF01535 PPR 223-252 aa PF13812 PPR_3 244-295 aa PF12854 PPR_1 250-282 aa PF13041 PPR_2 255-291 aa PF01535 PPR 257-285 aa PF13041 PPR_2 289-337 aa PF01535 PPR 293-320 aa PF13812 PPR_3 316-373 aa PF12854 PPR_1 322-349 aa PF13041 PPR_2 324-373 aa PF01535 PPR 327-357 aa PF12854 PPR_1 356-384 aa PF01535 PPR 362-384 aa PF12854 PPR_1 391-423 aa PF13812 PPR_3 392-439 aa PF13041 PPR_2 394-442 aa PF01535 PPR 397-424 aa PF12854 PPR_1 427-458 aa PF01535 PPR 433-462 aa PF13041 PPR_2 434-477 aa PF23276 TPR_24 434-524 aa PF13812 PPR_3 448-480 aa PF12854 PPR_1 460-491 aa PF13041 PPR_2 464-512 aa PF01535 PPR 467-497 aa PF13812 PPR_3 488-548 aa PF12854 PPR_1 495-525 aa PF13041 PPR_2 499-548 aa PF01535 PPR 502-531 aa PF12854 PPR_1 531-561 aa PF01535 PPR 537-567 aa PF13041 PPR_2 541-582 aa PF13812 PPR_3 558-611 aa PF12854 PPR_1 565-598 aa PF13041 PPR_2 570-618 aa PF01535 PPR 572-602 aa PF12854 PPR_1 600-632 aa PF13041 PPR_2 605-649 aa PF01535 PPR 607-637 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057780983.1 Pfam PF13041 PPR_2 Repeat 76 125 4.2e-196 635.8 PPR repeat family
XP_057780983.1 Pfam PF01535 PPR Repeat 81 107 3.2e-111 356.8 PPR repeat
XP_057780983.1 Pfam PF12854 PPR_1 Repeat 142 173 3.1e-158 513.8 PPR repeat
XP_057780983.1 Pfam PF13041 PPR_2 Repeat 146 196 4.2e-196 635.8 PPR repeat family
XP_057780983.1 Pfam PF01535 PPR Repeat 149 174 3.2e-111 356.8 PPR repeat
XP_057780983.1 Pfam PF12854 PPR_1 Repeat 180 207 3.1e-158 513.8 PPR repeat
XP_057780983.1 Pfam PF13041 PPR_2 Repeat 182 233 4.2e-196 635.8 PPR repeat family
XP_057780983.1 Pfam PF01535 PPR Repeat 185 211 3.2e-111 356.8 PPR repeat
XP_057780983.1 Pfam PF12854 PPR_1 Repeat 217 245 3.1e-158 513.8 PPR repeat
XP_057780983.1 Pfam PF13041 PPR_2 Repeat 219 268 4.2e-196 635.8 PPR repeat family
XP_057780983.1 Pfam PF23276 TPR_24 Repeat 221 310 6.5e-41 140.1 Pentatricopeptide repeat-containing protein
XP_057780983.1 Pfam PF01535 PPR Repeat 223 252 3.2e-111 356.8 PPR repeat
XP_057780983.1 Pfam PF13812 PPR_3 Repeat 244 295 5.9e-74 244.8 Pentatricopeptide repeat domain
XP_057780983.1 Pfam PF12854 PPR_1 Repeat 250 282 3.1e-158 513.8 PPR repeat
XP_057780983.1 Pfam PF13041 PPR_2 Repeat 255 291 4.2e-196 635.8 PPR repeat family
XP_057780983.1 Pfam PF01535 PPR Repeat 257 285 3.2e-111 356.8 PPR repeat
XP_057780983.1 Pfam PF13041 PPR_2 Repeat 289 337 4.2e-196 635.8 PPR repeat family
XP_057780983.1 Pfam PF01535 PPR Repeat 293 320 3.2e-111 356.8 PPR repeat
XP_057780983.1 Pfam PF13812 PPR_3 Repeat 316 373 5.9e-74 244.8 Pentatricopeptide repeat domain
XP_057780983.1 Pfam PF12854 PPR_1 Repeat 322 349 3.1e-158 513.8 PPR repeat
XP_057780983.1 Pfam PF13041 PPR_2 Repeat 324 373 4.2e-196 635.8 PPR repeat family
XP_057780983.1 Pfam PF01535 PPR Repeat 327 357 3.2e-111 356.8 PPR repeat
XP_057780983.1 Pfam PF12854 PPR_1 Repeat 356 384 3.1e-158 513.8 PPR repeat
XP_057780983.1 Pfam PF01535 PPR Repeat 362 384 3.2e-111 356.8 PPR repeat
XP_057780983.1 Pfam PF12854 PPR_1 Repeat 391 423 3.1e-158 513.8 PPR repeat
XP_057780983.1 Pfam PF13812 PPR_3 Repeat 392 439 5.9e-74 244.8 Pentatricopeptide repeat domain
XP_057780983.1 Pfam PF13041 PPR_2 Repeat 394 442 4.2e-196 635.8 PPR repeat family
XP_057780983.1 Pfam PF01535 PPR Repeat 397 424 3.2e-111 356.8 PPR repeat
XP_057780983.1 Pfam PF12854 PPR_1 Repeat 427 458 3.1e-158 513.8 PPR repeat
XP_057780983.1 Pfam PF01535 PPR Repeat 433 462 3.2e-111 356.8 PPR repeat
XP_057780983.1 Pfam PF13041 PPR_2 Repeat 434 477 4.2e-196 635.8 PPR repeat family
XP_057780983.1 Pfam PF23276 TPR_24 Repeat 434 524 6.5e-41 140.1 Pentatricopeptide repeat-containing protein
XP_057780983.1 Pfam PF13812 PPR_3 Repeat 448 480 5.9e-74 244.8 Pentatricopeptide repeat domain
XP_057780983.1 Pfam PF12854 PPR_1 Repeat 460 491 3.1e-158 513.8 PPR repeat
XP_057780983.1 Pfam PF13041 PPR_2 Repeat 464 512 4.2e-196 635.8 PPR repeat family
XP_057780983.1 Pfam PF01535 PPR Repeat 467 497 3.2e-111 356.8 PPR repeat
XP_057780983.1 Pfam PF13812 PPR_3 Repeat 488 548 5.9e-74 244.8 Pentatricopeptide repeat domain
XP_057780983.1 Pfam PF12854 PPR_1 Repeat 495 525 3.1e-158 513.8 PPR repeat
XP_057780983.1 Pfam PF13041 PPR_2 Repeat 499 548 4.2e-196 635.8 PPR repeat family
XP_057780983.1 Pfam PF01535 PPR Repeat 502 531 3.2e-111 356.8 PPR repeat
XP_057780983.1 Pfam PF12854 PPR_1 Repeat 531 561 3.1e-158 513.8 PPR repeat
XP_057780983.1 Pfam PF01535 PPR Repeat 537 567 3.2e-111 356.8 PPR repeat
XP_057780983.1 Pfam PF13041 PPR_2 Repeat 541 582 4.2e-196 635.8 PPR repeat family
XP_057780983.1 Pfam PF13812 PPR_3 Repeat 558 611 5.9e-74 244.8 Pentatricopeptide repeat domain
XP_057780983.1 Pfam PF12854 PPR_1 Repeat 565 598 3.1e-158 513.8 PPR repeat
XP_057780983.1 Pfam PF13041 PPR_2 Repeat 570 618 4.2e-196 635.8 PPR repeat family
XP_057780983.1 Pfam PF01535 PPR Repeat 572 602 3.2e-111 356.8 PPR repeat
XP_057780983.1 Pfam PF12854 PPR_1 Repeat 600 632 3.1e-158 513.8 PPR repeat
XP_057780983.1 Pfam PF13041 PPR_2 Repeat 605 649 4.2e-196 635.8 PPR repeat family
XP_057780983.1 Pfam PF01535 PPR Repeat 607 637 3.2e-111 356.8 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057925000.1
TGCAAAAAGTAATCCGAAAAATTCAACACTAAAGACTAAAAACAATTCTTAAGAATGTTTTAAATTGGATAAAAATGCGTTTTCCTCTTCACTGACTCCTCAAACGCGATTTCTCCTTCAACGGCTGAGATTTGATCGACAACATCCAACACTACCATTTCCGATTCCCCAAAACTCGATTTTCATCTTTCATCTCAGATAACCCTATCTCTCTATCTTCAACAGCAACCTTCCACAATTCTTCAGCTTCCAACTTCAGC...

CDS

1 records

下载 CDS FASTA
LOC130999470
ATGTTTCTGGGTAGAATTTTGTCAAATTCTTCATCTAAATTCTCTACTTTTGCCATCGCTTCTCTACATTCTCAATCATTTCTTGTAAAACCCAGATTCAATTTTGATAATGTCAGCTGCCAAATGAGACACTTATCCTCCTATCCCAGATTCGATTTTGAATCTATACGTGAGCCCAACGATGCCGTCGCTCTATTTCGGGATATGATGAGAACGGAGCCGCTTCCTTCTGTTATTCTTTTCACCAAATTGCTGAGTGC...

Protein

1 records

下载 Protein FASTA
XP_057780983.1
MFLGRILSNSSSKFSTFAIASLHSQSFLVKPRFNFDNVSCQMRHLSSYPRFDFESIREPNDAVALFRDMMRTEPLPSVILFTKLLSAVVKLKQYSAALHLFDKMLQRDAPVDHYTLGIAIDCCCRLKRPDFGFAILGIFFKRGYEPTVVTFNTLIKGLLLVGRIPEAAKVLCKLSAYQLCEPDEYTYSTIINGLCKAGDILQAIDLLCSLEKGKGSCKPNVYAYNIVIDGLCKDGKVDEALQLFSTLGDKGISPNVVTYS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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