当前解析结果
SmilChr08G004810| 统一新 Gene ID | SmilChr08G004810 |
|---|---|
| 名称 | SmilChr08G004810 |
| 描述 | ras-related protein RABA5b-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 57404892 - 57406748 / + |
| NCBI Gene ID | LOC130999472 |
|---|---|
| GeneID | 130999472 |
| locus_tag | - |
| NCBI Name | LOC130999472 |
| 原始查询 | LOC130999472 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ras-related protein RABA5b-like |
| 产物 | ras-related protein RABA5b-like |
| Arabidopsis | AT3G07410 (RABA5b)RAB GTPase homolog A5B [Source:NCBI gene (formerly Entrezgene);Acc:819929] identity=77.5; qcov=1.01; evalue=8.3e-118; confidence=high |
| Rice | Os08g0525000 (OsRab11G2)- identity=72.7; qcov=1.03; evalue=9.68e-112; confidence=high |
| GO | GO:0003924 (GTPase activity); GO:0005525 (GTP binding); GO:0005768 (endosome) |
| KEGG | - |
| Pfam | PF00025 (Arf); PF00071 (Ras); PF01926 (MMR_HSR1); PF08477 (Roc) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999472 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Golgi apparatus | 高尔基体 | 1.00000 | XP_057780985.1 |
| 2 | Trans-golgi network | Trans-golgi network | 1.00000 | XP_057780985.1 |
| 3 | Endosome | 内体 | 0.40000 | XP_057780985.1 |
| 4 | Cytoplasmic vesicle | 细胞质囊泡 | 0.20000 | XP_057780985.1 |
| 5 | Endocytic vesicle | Endocytic vesicle | 0.20000 | XP_057780985.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:57404895 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A9,B20,B46 |
Chr8:57404896 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A9,B20,B46 |
Chr8:57404898 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A9,B20,B46 |
Chr8:57404915 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A9,B20,B46 |
Chr8:57404919 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A9,B13,B20,B46 |
Chr8:57404952 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B102,B63,C34,C6 |
Chr8:57404962 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A21,B54,B62,B66,C25 |
Chr8:57404985 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B23,B57 |
Chr8:57405007 |
CG |
C |
1bp_deletion | frameshift_variant | 121 | A1,A10,A11,A13,A15,A16,A21,A23,A24,A4,A9,B1,B10,B100,B101,B102,B106,B107,B108,B113,B115,B117,B118,B120,B121,B125,B126,B127,B135,B136,B137,B138,B139,B20,B21,B23,B24,B29,B3,B33,B34,B36,B37,B39,B41,B45,B46,B48,B49,B52,B53,B54,B55,B56,B57,B59,B60,B62,B63,B64,B65,B66,B69,B7,B70,B74,B76,B77,B82,B83,B85,B86,B87,B97,C1,C12,C14,C15,C18,C21,C23,C25,C26,C27,C3,C34,C36,C4,C43,C44,C46,C47,C48,C50,C51,C52,C54,C56,C57,C58,C62,C66,C67,C69,C74,C77,C78,C79,C82,C83,C84,C85,C87,D1,D11,D2,D4,D5,D7,D8,D9 |
Chr8:57405071 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B86 |
Chr8:57405085 |
A |
AG |
1bp_insertion | frameshift_variant | 4 | A23,B115,B69,C83 |
Chr8:57405085 |
A |
AG |
1bp_insertion | CDS_variant | 4 | A23,B115,B69,C83 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057780985.1PF00025
Arf 10-169 aa
PF01926
MMR_HSR1 12-111 aa
PF08477
Roc 12-126 aa
PF00071
Ras 12-172 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057780985.1 |
Pfam | PF00025 |
Arf | Domain | 10 | 169 | 4.4e-15 | 56.3 | ADP-ribosylation factor family |
XP_057780985.1 |
Pfam | PF01926 |
MMR_HSR1 | Family | 12 | 111 | 3.7e-05 | 24.5 | 50S ribosome-binding GTPase |
XP_057780985.1 |
Pfam | PF08477 |
Roc | Domain | 12 | 126 | 8.9e-34 | 117.0 | Ras of Complex, Roc, domain of DAPkinase |
XP_057780985.1 |
Pfam | PF00071 |
Ras | Domain | 12 | 172 | 8.2e-62 | 208.3 | Ras family |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。