Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004103`

染色体: Chr01 坐标: 59503982-59505703 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004103`
名称	SmilChr01G004103
描述	calmodulin-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	59503982 - 59505703 / `-`

ID 对照

NCBI Gene ID	`LOC130999473`
GeneID	`130999473`
locus_tag	`-`
NCBI Name	`LOC130999473`
原始查询	`LOC130999473`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	calmodulin-like
产物	calmodulin-like
Arabidopsis	`AT1G66410` (CAM4) calmodulin 4 [Source:NCBI gene (formerly Entrezgene);Acc:842959] identity=66.2; qcov=1.01; evalue=2.61e-66; confidence=high
Rice	`Os01g0279300` (OsCaM3) - identity=65.8; qcov=1.01; evalue=2.53e-66; confidence=high
GO	GO:0005509 (calcium ion binding); GO:0030234 (enzyme regulator activity)
KEGG	smil04016 (MAPK signaling pathway - plant - Salvia miltiorrhiza (redroot sage)); smil04070 (Phosphatidylinositol signaling system - Salvia miltiorrhiza (redroot sage)); smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage)); smil04626 (Plant-pathogen interaction - Salvia miltiorrhiza (redroot sage))
Pfam	PF00036 (EF-hand_1); PF12763 (EH); PF13202 (EF-hand_5); PF13405 (EF-hand_6); PF13499 (EF-hand_7); PF13833 (EF-hand_8)
InterPro	-
eggNOG	-
NR	GeneID:130999473

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057780997.1`
2	Cytoplasm	细胞质	0.60000	`XP_057780989.1`
3	Nucleus	细胞核	0.00000	`XP_057780989.1`
4	Chromosome	染色体	0.00000	`XP_057780989.1`
5	Centromere	着丝粒	0.00000	`XP_057780989.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:59505193`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B64,C36

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780989.1

151 aa

151

EF-hand_1

EF-hand_6

EF-hand_7

EF-hand_5

EF-hand_8

EF-hand_1

EF-hand_5

EF-hand_8

EF-hand_7

EF-hand_1

EF-hand_6

EF-hand_5

EF-hand_8

EF-hand_1

EF-hand_5

PF12763 EH 5-73 aa PF00036 EF-hand_1 12-39 aa PF13405 EF-hand_6 12-40 aa PF13499 EF-hand_7 12-73 aa PF13202 EF-hand_5 14-36 aa PF13833 EF-hand_8 24-75 aa PF00036 EF-hand_1 48-75 aa PF13202 EF-hand_5 49-72 aa PF13833 EF-hand_8 82-108 aa PF13499 EF-hand_7 83-146 aa PF00036 EF-hand_1 84-109 aa PF13405 EF-hand_6 84-113 aa PF13202 EF-hand_5 85-109 aa PF13833 EF-hand_8 105-145 aa PF00036 EF-hand_1 120-147 aa PF13202 EF-hand_5 123-145 aa

XP_057780997.1

147 aa

147

EF-hand_7

EF-hand_8

EF-hand_1

EF-hand_5

EF-hand_8

EF-hand_7

EF-hand_1

EF-hand_6

EF-hand_5

EF-hand_8

EF-hand_1

EF-hand_5

PF13499 EF-hand_7 13-69 aa PF13833 EF-hand_8 25-71 aa PF00036 EF-hand_1 44-71 aa PF13202 EF-hand_5 45-68 aa PF13833 EF-hand_8 78-105 aa PF13499 EF-hand_7 79-142 aa PF00036 EF-hand_1 80-105 aa PF13405 EF-hand_6 80-109 aa PF13202 EF-hand_5 81-105 aa PF13833 EF-hand_8 101-141 aa PF00036 EF-hand_1 116-143 aa PF13202 EF-hand_5 119-141 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057780989.1`	Pfam	`PF12763`	EH	Domain	5	73	1.6e-08	35.1	EH domain
`XP_057780989.1`	Pfam	`PF00036`	EF-hand_1	Domain	12	39	1.1e-36	122.3	EF hand domain
`XP_057780989.1`	Pfam	`PF13405`	EF-hand_6	Domain	12	40	4.2e-29	98.2	EF-hand domain
`XP_057780989.1`	Pfam	`PF13499`	EF-hand_7	Domain	12	73	2.6e-37	127.7	EF-hand domain pair
`XP_057780989.1`	Pfam	`PF13202`	EF-hand_5	Domain	14	36	3.1e-27	93.5	EF hand
`XP_057780989.1`	Pfam	`PF13833`	EF-hand_8	Domain	24	75	6.4e-24	84.2	EF-hand domain pair
`XP_057780989.1`	Pfam	`PF00036`	EF-hand_1	Domain	48	75	1.1e-36	122.3	EF hand domain
`XP_057780989.1`	Pfam	`PF13202`	EF-hand_5	Domain	49	72	3.1e-27	93.5	EF hand
`XP_057780989.1`	Pfam	`PF13833`	EF-hand_8	Domain	82	108	6.4e-24	84.2	EF-hand domain pair
`XP_057780989.1`	Pfam	`PF13499`	EF-hand_7	Domain	83	146	2.6e-37	127.7	EF-hand domain pair
`XP_057780989.1`	Pfam	`PF00036`	EF-hand_1	Domain	84	109	1.1e-36	122.3	EF hand domain
`XP_057780989.1`	Pfam	`PF13405`	EF-hand_6	Domain	84	113	4.2e-29	98.2	EF-hand domain
`XP_057780989.1`	Pfam	`PF13202`	EF-hand_5	Domain	85	109	3.1e-27	93.5	EF hand
`XP_057780989.1`	Pfam	`PF13833`	EF-hand_8	Domain	105	145	6.4e-24	84.2	EF-hand domain pair
`XP_057780989.1`	Pfam	`PF00036`	EF-hand_1	Domain	120	147	1.1e-36	122.3	EF hand domain
`XP_057780989.1`	Pfam	`PF13202`	EF-hand_5	Domain	123	145	3.1e-27	93.5	EF hand
`XP_057780997.1`	Pfam	`PF13499`	EF-hand_7	Domain	13	69	4.4e-30	104.5	EF-hand domain pair
`XP_057780997.1`	Pfam	`PF13833`	EF-hand_8	Domain	25	71	5.7e-22	77.9	EF-hand domain pair
`XP_057780997.1`	Pfam	`PF00036`	EF-hand_1	Domain	44	71	4.3e-30	101.7	EF hand domain
`XP_057780997.1`	Pfam	`PF13202`	EF-hand_5	Domain	45	68	1.4e-20	72.4	EF hand
`XP_057780997.1`	Pfam	`PF13833`	EF-hand_8	Domain	78	105	5.7e-22	77.9	EF-hand domain pair
`XP_057780997.1`	Pfam	`PF13499`	EF-hand_7	Domain	79	142	4.4e-30	104.5	EF-hand domain pair
`XP_057780997.1`	Pfam	`PF00036`	EF-hand_1	Domain	80	105	4.3e-30	101.7	EF hand domain
`XP_057780997.1`	Pfam	`PF13405`	EF-hand_6	Domain	80	109	4.4e-22	76.4	EF-hand domain
`XP_057780997.1`	Pfam	`PF13202`	EF-hand_5	Domain	81	105	1.4e-20	72.4	EF hand
`XP_057780997.1`	Pfam	`PF13833`	EF-hand_8	Domain	101	141	5.7e-22	77.9	EF-hand domain pair
`XP_057780997.1`	Pfam	`PF00036`	EF-hand_1	Domain	116	143	4.3e-30	101.7	EF hand domain
`XP_057780997.1`	Pfam	`PF13202`	EF-hand_5	Domain	119	141	1.4e-20	72.4	EF hand

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057925006.1
CGATTCCAAATTTCTTTGAGAAGCTTCAGTCTTGAACGTTGAACACAAACTTTTTTTCTTTTCAAAACATAGTTTGACTTTTTCCACCATTTCACATCGCAGTTTTAAAAAGCGTGCCATTTTTTGTTTATTATTCATACACATAAAAGTTGGCAGAAATTCAGTTCACCGTATTCCTACTTCCAAACTGAGATCTCTCTGTCTACTTCCCATTAAAAAAAAAAAATCTCCATTTTTTTTTTCTAATTTCAGTAATGGCT...

XM_057925014.1
GCTTCAGTCTTGAACGTTGAACACAAACTTTTTTTCTTTTCAAAACATAGTTTGACTTTTTCCACCATTTCACATCGCAGTTTTAAAAAGCGTGCCATTTTTTGTTTATTATTCATACACATAAAAGTTGGCAGAAATTCAGTTCACCGTATTCCTACTTCCAAACTGAGATCTCTCTGTCTACTTCCCATTAAAAAAAAAAAATCTCCATTTTTTTTTTCTAATTTCAGTAATGGCTGATGCATTGACGGAGGAGCAGA...

CDS

2 records

下载 CDS FASTA

LOC130999473
ATGGCTGATGCATTGACGGAGGAGCAGATTGCTGAGTTCCGGGAGGCCTTCTCCCTAATCGATAAAGATTCCGACGTGGAAGAATTGGCAACAGTGATTCAATCTCTGAATGAACATCCAACAAAAGAAGAAATCCAAGAAATGATGAATGAGGTTGATGCAGATGGAGATGGCACTGTGGATTTCGAGGAGTTTTTGAGTATTATGGCAAGAAAAATGAAGGAAAATGTTGCAGAGGAATTGAAAGAAGCTTTCAAAGT...

LOC130999473
ATGGCTGATGCATTGACGGAGGAGCAGATTGCTGAGTTCCGGGAGGCCTTCTCCCTAATCGATAAAGATTCCGACGGGATGATCACAGTGGAAGAATTGGCAACAGTGATTCAATCTCTGAATGAACATCCAACAAAAGAAGAAATCCAAGAAATGATGAATGAGGTTGATGCAGATGGAGATGGCACTGTGGATTTCGAGGAGTTTTTGAGTATTATGGCAAGAAAAATGAAGGAAAATGTTGCAGAGGAATTGAAAGA...

Protein

2 records

下载 Protein FASTA

XP_057780989.1
MADALTEEQIAEFREAFSLIDKDSDGMITVEELATVIQSLNEHPTKEEIQEMMNEVDADGDGTVDFEEFLSIMARKMKENVAEELKEAFKVFDRDQDGFISAIELRNVMLNLGERLSDEEAEQMIREADLDGDGLVSYEEFVRMMMASAAF

XP_057780997.1
MADALTEEQIAEFREAFSLIDKDSDVEELATVIQSLNEHPTKEEIQEMMNEVDADGDGTVDFEEFLSIMARKMKENVAEELKEAFKVFDRDQDGFISAIELRNVMLNLGERLSDEEAEQMIREADLDGDGLVSYEEFVRMMMASAAF

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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