Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G004816`

染色体: Chr08 坐标: 57445948-57457677 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G004816`
名称	SmilChr08G004816
描述	adenylylsulfatase HINT3
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	57445948 - 57457677 / `+`

ID 对照

NCBI Gene ID	`LOC130999478`
GeneID	`130999478`
locus_tag	`-`
NCBI Name	`LOC130999478`
原始查询	`LOC130999478`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	adenylylsulfatase HINT3
产物	adenylylsulfatase HINT3
Arabidopsis	`AT5G48545` (HINT3) histidine triad nucleotide-binding 3 [Source:NCBI gene (formerly Entrezgene);Acc:2746201] identity=64.4; qcov=1; evalue=8.31e-59; confidence=high
Rice	`Os12g0233300` - identity=53.5; qcov=1.09; evalue=9.59e-50; confidence=medium
GO	GO:0006790 (sulfur compound metabolic process); GO:0009150 (purine ribonucleotide metabolic process); GO:0047627 (adenylylsulfatase activity)
KEGG	-
Pfam	PF01230 (HIT); PF11969 (DcpS_C)
InterPro	-
eggNOG	-
NR	GeneID:130999478

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057780991.1`
2	Chloroplast	叶绿体	0.80000	`XP_057780992.1`
3	Mitochondrion matrix	线粒体基质	0.20000	`XP_057780991.1`
4	Cytosol	细胞质基质	0.20000	`XP_057780992.1`
5	Nucleus	细胞核	0.00000	`XP_057780993.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:57446224`	`TC`	`T`	1bp_deletion	frameshift_variant	1	B3
`Chr8:57446224`	`TC`	`T`	1bp_deletion	CDS_variant	1	B3
`Chr8:57446273`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B131,B82
`Chr8:57447481`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C85,D2
`Chr8:57457237`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B97
`Chr8:57457294`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C13
`Chr8:57457320`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B119,B37,B5,C71,D2

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780991.1

207 aa

104

207

DcpS_C

HIT

PF11969 DcpS_C 53-155 aa PF01230 HIT 61-156 aa

XP_057780992.1

152 aa

152

DcpS_C

HIT

PF11969 DcpS_C 53-111 aa PF01230 HIT 61-146 aa

XP_057780993.1

146 aa

146

DcpS_C

HIT

PF11969 DcpS_C 53-101 aa PF01230 HIT 61-146 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057780991.1`	Pfam	`PF11969`	DcpS_C	Family	53	155	6.1e-11	43.5	Scavenger mRNA decapping enzyme C-term binding
`XP_057780991.1`	Pfam	`PF01230`	HIT	Domain	61	156	1.1e-22	81.2	HIT domain
`XP_057780992.1`	Pfam	`PF11969`	DcpS_C	Family	53	111	5e-08	34.1	Scavenger mRNA decapping enzyme C-term binding
`XP_057780992.1`	Pfam	`PF01230`	HIT	Domain	61	146	2.3e-16	61.0	HIT domain
`XP_057780993.1`	Pfam	`PF11969`	DcpS_C	Family	53	101	1e-07	33.1	Scavenger mRNA decapping enzyme C-term binding
`XP_057780993.1`	Pfam	`PF01230`	HIT	Domain	61	146	3.8e-16	60.2	HIT domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057925008.1
GAAAAAAAAAACATTTAATAACACAAATAAAAATACAAAAGAAAAAAAAAATAGTATACAGAAACAAACAGTTATCAACAATATTATCTGAATCAAACAAAATAAACACACAATTTTTTTTAAAAAAATCTCTAAAATTCTTTCTCTATTTTGTCAGAAGCTTTTCGACGCAGAAATCCATGGCGCACACACTCTCGTAGCCAACCCCTTTACTGTTTTCACGTTTGCTTTCTCACAATGGAGGCTCGTGCACGACGTCG...

XM_057925010.1
AAAAATAGTATACAGAAACAAACAGTTATCAACAATATTATCTGAATCAAACAAAATAAACACACAATTTTTTTTAAAAAAATCTCTAAAATTCTTTCTCTATTTTGTCAGAAGCTTTTCGACGCAGAAATCCATGGCGCACACACTCTCGTAGCCAACCCCTTTACTGTTTTCACGTTTGCTTTCTCACAATGGAGGCTCGTGCACGACGTCGTTTAGCTCTGCTTTCCTCCCACGTGAACCCACTCGCAGAAACCCCG...

CDS

3 records

下载 CDS FASTA

LOC130999478
ATGGAGGCTCGTGCACGACGTCGTTTAGCTCTGCTTTCCTCCCACGTGAACCCACTCGCAGAAACCCCGGGCACGGCGTCGTTTAGCTCGCTGATGGCTTCCACTTGCGCTAGCGGCCATGACGGAGAGAAGGAGATGAAGAAGGGAGGAAATGATTGTGTATTTTGCAGGATTATTCTCGGCGAAGCTCCTTCTTTAAAATTATATGAAGATGATGAGTGCCTGTGCATTTTGGATACATATCCTCTATGTCATGGGCA...

Protein

3 records

下载 Protein FASTA

XP_057780991.1
MEARARRRLALLSSHVNPLAETPGTASFSSLMASTCASGHDGEKEMKKGGNDCVFCRIILGEAPSLKLYEDDECLCILDTYPLCHGHSLIIPKSHYPSLDATPPSIIGAMCSKVPLISNAVMKVTGCDSFNLLVNNGAAAGQVIYHTHIHIIPRKANDCLWTSESLRRRPMKVDQEVSRLADRIRESLMFVNSYEDSKGQGSTLVAN

XP_057780992.1
MEARARRRLALLSSHVNPLAETPGTASFSSLMASTCASGHDGEKEMKKGGNDCVFCRIILGEAPSLKLYEDDECLCILDTYPLCHGHSLIIPKSHYPSLDATPPSIIGAMCSKVPLISNAVMKVTGCDSFNLLVNNGAAAGQVIYHFRLTST

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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