Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G004822`

染色体: Chr08 坐标: 57497857-57501466 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G004822`
名称	SmilChr08G004822
描述	peptidyl-prolyl cis-trans isomerase FKBP62-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	57497857 - 57501466 / `-`

ID 对照

NCBI Gene ID	`LOC130999483`
GeneID	`130999483`
locus_tag	`-`
NCBI Name	`LOC130999483`
原始查询	`LOC130999483`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	peptidyl-prolyl cis-trans isomerase FKBP62-like
产物	peptidyl-prolyl cis-trans isomerase FKBP62-like
Arabidopsis	`AT3G25230` (ROF1) rotamase FKBP 1 [Source:NCBI gene (formerly Entrezgene);Acc:822117] identity=83.1; qcov=0.943; evalue=0; confidence=high
Rice	`Os08g0525600` (OsFKBP62a) - identity=76.5; qcov=1.01; evalue=0; confidence=high
GO	GO:0000413 (protein peptidyl-prolyl isomerization); GO:0003755 (peptidyl-prolyl cis-trans isomerase activity); GO:0005515 (protein binding); GO:0005737 (cytoplasm); GO:0061077 (GO:0061077)
KEGG	-
Pfam	PF00254 (FKBP_C); PF00515 (TPR_1); PF07719 (TPR_2); PF13181 (TPR_8); PF14559 (TPR_19)
InterPro	-
eggNOG	-
NR	GeneID:130999483

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057781003.1`
2	Cytosol	细胞质基质	1.00000	`XP_057781003.1`
3	Nucleus	细胞核	0.40000	`XP_057781003.1`
4	Nucleoplasm	核质	0.40000	`XP_057781003.1`
5	Chromosome	染色体	0.00000	`XP_057781003.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:57498732`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B4
`Chr8:57498740`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B53
`Chr8:57498764`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B36
`Chr8:57499422`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B106,C47
`Chr8:57499684`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C26
`Chr8:57499866`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	C11,C69,C76,D8
`Chr8:57500170`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A24,B40,C60,C62
`Chr8:57500185`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A19
`Chr8:57500582`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A24,B40,C60,C62
`Chr8:57500592`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B118,C14,C33,D7
`Chr8:57501103`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B10,C85,D2
`Chr8:57501184`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C82,C87

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781003.1

561 aa

280

561

FKBP_C

TPR_19

TPR_1

TPR_2

TPR_8

PF00254 FKBP_C 52-143 aa PF00254 FKBP_C 169-260 aa PF00254 FKBP_C 285-383 aa PF14559 TPR_19 463-520 aa PF00515 TPR_1 486-519 aa PF07719 TPR_2 487-519 aa PF13181 TPR_8 487-519 aa

XP_057781004.1

561 aa

280

561

FKBP_C

TPR_19

TPR_1

TPR_2

TPR_8

PF00254 FKBP_C 52-143 aa PF00254 FKBP_C 169-260 aa PF00254 FKBP_C 285-383 aa PF14559 TPR_19 463-520 aa PF00515 TPR_1 486-519 aa PF07719 TPR_2 487-519 aa PF13181 TPR_8 487-519 aa

XP_057781005.1

560 aa

280

560

FKBP_C

TPR_19

TPR_1

TPR_2

TPR_8

PF00254 FKBP_C 52-143 aa PF00254 FKBP_C 169-260 aa PF00254 FKBP_C 285-382 aa PF14559 TPR_19 462-519 aa PF00515 TPR_1 485-518 aa PF07719 TPR_2 486-518 aa PF13181 TPR_8 486-518 aa

XP_057781006.1

560 aa

280

560

FKBP_C

TPR_19

TPR_1

TPR_2

TPR_8

PF00254 FKBP_C 52-143 aa PF00254 FKBP_C 169-260 aa PF00254 FKBP_C 285-382 aa PF14559 TPR_19 462-519 aa PF00515 TPR_1 485-518 aa PF07719 TPR_2 486-518 aa PF13181 TPR_8 486-518 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057781003.1`	Pfam	`PF00254`	FKBP_C	Domain	52	143	5.1e-81	267.8	FKBP-type peptidyl-prolyl cis-trans isomerase
`XP_057781003.1`	Pfam	`PF00254`	FKBP_C	Domain	169	260	5.1e-81	267.8	FKBP-type peptidyl-prolyl cis-trans isomerase
`XP_057781003.1`	Pfam	`PF00254`	FKBP_C	Domain	285	383	5.1e-81	267.8	FKBP-type peptidyl-prolyl cis-trans isomerase
`XP_057781003.1`	Pfam	`PF14559`	TPR_19	Repeat	463	520	3.7e-07	31.1	Tetratricopeptide repeat
`XP_057781003.1`	Pfam	`PF00515`	TPR_1	Repeat	486	519	4.6e-13	49.1	Tetratricopeptide repeat
`XP_057781003.1`	Pfam	`PF07719`	TPR_2	Repeat	487	519	1.8e-11	43.9	Tetratricopeptide repeat
`XP_057781003.1`	Pfam	`PF13181`	TPR_8	Repeat	487	519	1.8e-08	34.6	Tetratricopeptide repeat
`XP_057781004.1`	Pfam	`PF00254`	FKBP_C	Domain	52	143	5.1e-81	267.8	FKBP-type peptidyl-prolyl cis-trans isomerase
`XP_057781004.1`	Pfam	`PF00254`	FKBP_C	Domain	169	260	5.1e-81	267.8	FKBP-type peptidyl-prolyl cis-trans isomerase
`XP_057781004.1`	Pfam	`PF00254`	FKBP_C	Domain	285	383	5.1e-81	267.8	FKBP-type peptidyl-prolyl cis-trans isomerase
`XP_057781004.1`	Pfam	`PF14559`	TPR_19	Repeat	463	520	3.7e-07	31.1	Tetratricopeptide repeat
`XP_057781004.1`	Pfam	`PF00515`	TPR_1	Repeat	486	519	4.6e-13	49.1	Tetratricopeptide repeat
`XP_057781004.1`	Pfam	`PF07719`	TPR_2	Repeat	487	519	1.8e-11	43.9	Tetratricopeptide repeat
`XP_057781004.1`	Pfam	`PF13181`	TPR_8	Repeat	487	519	1.8e-08	34.6	Tetratricopeptide repeat
`XP_057781005.1`	Pfam	`PF00254`	FKBP_C	Domain	52	143	2.5e-82	272.0	FKBP-type peptidyl-prolyl cis-trans isomerase
`XP_057781005.1`	Pfam	`PF00254`	FKBP_C	Domain	169	260	2.5e-82	272.0	FKBP-type peptidyl-prolyl cis-trans isomerase
`XP_057781005.1`	Pfam	`PF00254`	FKBP_C	Domain	285	382	2.5e-82	272.0	FKBP-type peptidyl-prolyl cis-trans isomerase
`XP_057781005.1`	Pfam	`PF14559`	TPR_19	Repeat	462	519	3.7e-07	31.1	Tetratricopeptide repeat
`XP_057781005.1`	Pfam	`PF00515`	TPR_1	Repeat	485	518	4.5e-13	49.1	Tetratricopeptide repeat
`XP_057781005.1`	Pfam	`PF07719`	TPR_2	Repeat	486	518	1.8e-11	43.9	Tetratricopeptide repeat
`XP_057781005.1`	Pfam	`PF13181`	TPR_8	Repeat	486	518	1.8e-08	34.6	Tetratricopeptide repeat
`XP_057781006.1`	Pfam	`PF00254`	FKBP_C	Domain	52	143	2.5e-82	272.0	FKBP-type peptidyl-prolyl cis-trans isomerase
`XP_057781006.1`	Pfam	`PF00254`	FKBP_C	Domain	169	260	2.5e-82	272.0	FKBP-type peptidyl-prolyl cis-trans isomerase
`XP_057781006.1`	Pfam	`PF00254`	FKBP_C	Domain	285	382	2.5e-82	272.0	FKBP-type peptidyl-prolyl cis-trans isomerase
`XP_057781006.1`	Pfam	`PF14559`	TPR_19	Repeat	462	519	3.7e-07	31.1	Tetratricopeptide repeat
`XP_057781006.1`	Pfam	`PF00515`	TPR_1	Repeat	485	518	4.5e-13	49.1	Tetratricopeptide repeat
`XP_057781006.1`	Pfam	`PF07719`	TPR_2	Repeat	486	518	1.8e-11	43.9	Tetratricopeptide repeat
`XP_057781006.1`	Pfam	`PF13181`	TPR_8	Repeat	486	518	1.8e-08	34.6	Tetratricopeptide repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057925021.1
AGAAGAATTAAAATTTAAAATTAAATAACTTGAGATTCAATTAGATTTGCAATTGCAGAAATCAATGGTTTTGGCCTTCCGTCGTCACAGCAGCTTCACTATATAAACCCTCGTGGAACTCTCTAGAACTTCTCTACTGAAGATGGAAATGGCGGACGATTTCGAGATTCCGGCGGCGGAGGGGATGGAGGCGGACTTGGATCTGCCGGAGGAGAGCAGCTACATGAAGGTCGGAGAGGAGAAGGAGATCGGAGGACAAG...

XM_057925023.1
AAAATTAAATAACTTGAGATTCAATTAGATTTGCAATTGCAGAAATCAATGGTTTTGGCCTTCCGTCGTCACAGCAGCTTCACTATATAAACCCTCGTGGAACTCTCTAGAACTTCTCTACTGAAGATGGAAATGGCGGACGATTTCGAGATTCCGGCGGCGGAGGGGATGGAGGCGGACTTGGATCTGCCGGAGGAGAGCAGCTACATGAAGGTCGGAGAGGAGAAGGAGATCGGAGGACAAGGTCTGAAGAAGAAGCT...

CDS

4 records

下载 CDS FASTA

LOC130999483
ATGGAAATGGCGGACGATTTCGAGATTCCGGCGGCGGAGGGGATGGAGGCGGACTTGGATCTGCCGGAGGAGAGCAGCTACATGAAGGTCGGAGAGGAGAAGGAGATCGGAGGACAAGGTCTGAAGAAGAAGCTCGTCAAGGAAGGCGAAGGCTGGGAAACTCCGGACAATGGCGACGAAGTCCAAGTTCATTACACTGGAACGTTGCTGGATGGAACTAAGTTCGATTCGAGCCGTGATAGAGGAGACCCTTTCACGTT...

Protein

4 records

下载 Protein FASTA

XP_057781003.1
MEMADDFEIPAAEGMEADLDLPEESSYMKVGEEKEIGGQGLKKKLVKEGEGWETPDNGDEVQVHYTGTLLDGTKFDSSRDRGDPFTFTLGQGQVIKGWDEGIKTMKKGENAVFTIPPELAYGESGSPPTIPANATLQFDVELLSWLSVKDICKDGGVFKKILKEGEKWENPKDPDEVFVKYEARLEDGTRVAKSDGVEFTVQEGHFCPALSKAVKTMKKGEKVLLTVKPQYGFGEKGKSVSGDVGAVPPNATLDIDLELV...

XP_057781004.1
MEMADDFEIPAAEGMEADLDLPEESSYMKVGEEKEIGGQGLKKKLVKEGEGWETPDNGDEVQVHYTGTLLDGTKFDSSRDRGDPFTFTLGQGQVIKGWDEGIKTMKKGENAVFTIPPELAYGESGSPPTIPANATLQFDVELLSWLSVKDICKDGGVFKKILKEGEKWENPKDPDEVFVKYEARLEDGTRVAKSDGVEFTVQEGHFCPALSKAVKTMKKGEKVLLTVKPQYGFGEKGKSVSGDVGAVPPNATLDIDLELV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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